Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

How to Make a Living by Exhaling Methane

(2010) James G. Ferry   Annual Review of Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses

(2010) Etienne Yergeau et al.   ISME Journal

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

(2009) Erik Kristiansson et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Soil organic carbon pools in the northern circumpolar permafrost region

(2009) C. Tarnocai et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

Vulnerability of Permafrost Carbon to Climate Change: Implications for the Global Carbon Cycle

(2008) Edward A. G. Schuur et al.   BIOSCIENCE

Microbial diversity and activity through a permafrost/ground ice core profile from the Canadian high Arctic

(2008) Blaire Steven et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of ancient remains through genomic sequencing

(2008) M. J. Blow et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.

(2008) S. Sakai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

A novel and rapid method for synthesizing positive controls and standards for quantitative PCR

(2008) Maude M. David et al.   JOURNAL OF MICROBIOLOGICAL METHODS

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY