标题
The trajectory of microbial single-cell sequencing
作者
关键词
-
出版物
NATURE METHODS
Volume 14, Issue 11, Pages 1045-1054
出版商
Springer Nature
发表日期
2017-11-01
DOI
10.1038/nmeth.4469
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- An alternative polysaccharide uptake mechanism of marine bacteria
- (2017) Greta Reintjes et al. ISME Journal
- Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding
- (2017) Freeman Lan et al. NATURE BIOTECHNOLOGY
- Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)
- (2017) Chongyi Chen et al. SCIENCE
- Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
- (2017) Ramunas Stepanauskas et al. Nature Communications
- High-throughput automated microfluidic sample preparation for accurate microbial genomics
- (2017) Soohong Kim et al. Nature Communications
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Virtual microfluidics for digital quantification and single-cell sequencing
- (2016) Liyi Xu et al. NATURE METHODS
- Single-cell genome sequencing: current state of the science
- (2016) Charles Gawad et al. NATURE REVIEWS GENETICS
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia
- (2016) Roland Hatzenpichler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Scaling laws predict global microbial diversity
- (2016) Kenneth J. Locey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Status of the Archaeal and Bacterial Census: an Update
- (2016) Patrick D. Schloss et al. mBio
- Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
- (2016) Louie Wurch et al. Nature Communications
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Communications
- Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Microbiology
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs
- (2015) Jacob H. Munson-McGee et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
- (2015) Itai Sharon et al. GENOME RESEARCH
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution
- (2015) Joran Martijn et al. ISME Journal
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- (2015) Jessica M Labonté et al. ISME Journal
- Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- (2015) Sarah J Spencer et al. ISME Journal
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- Ecology and exploration of the rare biosphere
- (2015) Michael D. J. Lynch et al. NATURE REVIEWS MICROBIOLOGY
- Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH)
- (2015) Tsuyoshi Yamaguchi et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
- (2015) Simon Roux et al. eLife
- Reconstructing each cell's genome within complex microbial communities—dream or reality?
- (2015) Scott Clingenpeel et al. Frontiers in Microbiology
- Wiretapping into microbial interactions by single cell genomics
- (2015) Ramunas Stepanauskas Frontiers in Microbiology
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Function-driven single-cell genomics
- (2015) Tanja Woyke et al. Microbial Biotechnology
- Effects of sample treatments on genome recovery via single-cell genomics
- (2014) Scott Clingenpeel et al. ISME Journal
- Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’
- (2014) Noha H Youssef et al. ISME Journal
- An environmental bacterial taxon with a large and distinct metabolic repertoire
- (2014) Micheal C. Wilson et al. NATURE
- Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
- (2014) Christian Rinke et al. Nature Protocols
- Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes
- (2014) Armand E K Dichosa et al. Nature Protocols
- Recent advances in genomic DNA sequencing of microbial species from single cells
- (2014) Roger S. Lasken et al. NATURE REVIEWS GENETICS
- A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
- (2014) Charles F. A. de Bourcy et al. PLoS One
- Comparison of Multiple Displacement Amplification (MDA) and Multiple Annealing and Looping-Based Amplification Cycles (MALBAC) in Single-Cell Sequencing
- (2014) Minfeng Chen et al. PLoS One
- Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
- (2014) David Berry et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
- (2014) Xuesong He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Searching for new branches on the tree of life
- (2014) T. Woyke et al. SCIENCE
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics
- (2014) Philipp Engel et al. PLoS Genetics
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park
- (2013) Mircea Podar et al. Biology Direct
- Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome
- (2013) M. S. Fitzsimons et al. GENOME RESEARCH
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Predominant archaea in marine sediments degrade detrital proteins
- (2013) Karen G. Lloyd et al. NATURE
- Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells
- (2013) Jeff Gole et al. NATURE BIOTECHNOLOGY
- UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
- (2013) J. H. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
- (2013) Jeremy A. Dodsworth et al. Nature Communications
- A Single-Cell Genome for Thiovulum sp.
- (2012) Ian P. G. Marshall et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Single cell genomics: an individual look at microbes
- (2012) Ramunas Stepanauskas CURRENT OPINION IN MICROBIOLOGY
- Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)
- (2012) Sünje J. Pamp et al. GENOME RESEARCH
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia
- (2012) Manuel Martinez-Garcia et al. PLoS One
- A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
- (2012) K. Leung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
- (2012) C. Zong et al. SCIENCE
- Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
- (2011) Chris L Dupont et al. ISME Journal
- Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
- (2011) Hamidreza Chitsaz et al. NATURE BIOTECHNOLOGY
- Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis
- (2011) Paul C. Blainey et al. PLoS One
- Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
- (2011) H. S. Yoon et al. SCIENCE
- Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
- (2011) M. Hess et al. SCIENCE
- EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
- (2011) Christopher S Miller et al. GENOME BIOLOGY
- Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations
- (2010) Suzan Yilmaz et al. ISME Journal
- Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
- (2010) Alexander Siegl et al. ISME Journal
- One Bacterial Cell, One Complete Genome
- (2010) Tanja Woyke et al. PLoS One
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
- (2009) Dongying Wu et al. NATURE
- Assembling the Marine Metagenome, One Cell at a Time
- (2009) Tanja Woyke et al. PLoS One
- Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
- (2009) Sébastien Rodrigue et al. PLoS One
- Ecology of the rare microbial biosphere of the Arctic Ocean
- (2009) Pierre E. Galand et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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