Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia

Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction

(2016) S. Scheller et al.   SCIENCE

Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane

(2016) Gunter Wegener et al.   Frontiers in Microbiology

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

(2016) Elizabeth Trembath-Reichert et al.   PeerJ

Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses

(2015) Anne E Dekas et al.   ISME Journal

Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA

(2015) Olivia U. Mason et al.   MICROBIAL ECOLOGY

The Molecular Timeline of a Reviving Bacterial Spore

(2015) Lior Sinai et al.   MOLECULAR CELL

Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria

(2015) Gunter Wegener et al.   NATURE

Single cell activity reveals direct electron transfer in methanotrophic consortia

(2015) Shawn E. McGlynn et al.   NATURE

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growth and activity of ANME clades with different sulfate and sulfide concentrations in the presence of methane

(2015) Peer H. A. Timmers et al.   Frontiers in Microbiology

Reconstructing each cell's genome within complex microbial communities—dream or reality?

(2015) Scott Clingenpeel et al.   Frontiers in Microbiology

Individual cell DNA synthesis within natural marine bacterial assemblages as detected by ‘click’ chemistry

(2014) S Smriga et al.   AQUATIC MICROBIAL ECOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

In situvisualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry

(2014) Roland Hatzenpichler et al.   ENVIRONMENTAL MICROBIOLOGY

Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the 'deep sea-1' clade of marine methanotrophs

(2014) P. L. Tavormina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Effects of sample treatments on genome recovery via single-cell genomics

(2014) Scott Clingenpeel et al.   ISME Journal

Quantitative, Time-Resolved Proteomic Analysis by Combining Bioorthogonal Noncanonical Amino Acid Tagging and Pulsed Stable Isotope Labeling by Amino Acids in Cell Culture

(2014) John D. Bagert et al.   MOLECULAR & CELLULAR PROTEOMICS

Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics

(2014) Christian Rinke et al.   Nature Protocols

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

(2014) David Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Distribution of the verrucomicrobial cladeSpartobacteriaalong a salinity gradient in the Baltic Sea

(2014) Benjamin Bergen et al.   Environmental Microbiology Reports

Methanogenic capabilities of ANME-archaea deduced from13C-labelling approaches

(2013) Sebastian Bertram et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane

(2013) A Green-Saxena et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Distribution andin situabundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

(2012) Sara Kleindienst et al.   ENVIRONMENTAL MICROBIOLOGY

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Global distribution and diversity of marine Verrucomicrobia

(2012) Sara Freitas et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Noncanonical Amino Acids in the Interrogation of Cellular Protein Synthesis

(2011) John T. Ngo et al.   ACCOUNTS OF CHEMICAL RESEARCH

Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea

(2011) Karen G. Lloyd et al.   ENVIRONMENTAL MICROBIOLOGY

Niche Separation of Methanotrophic Archaea (ANME-1 and -2) in Methane-Seep Sediments of the Eastern Japan Sea Offshore Joetsu

(2011) Katsunori Yanagawa et al.   GEOMICROBIOLOGY JOURNAL

Respiration Response Imaging for Real-Time Detection of Microbial Function at the Single-Cell Level

(2010) M. C. Konopka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations

(2010) Suzan Yilmaz et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons

(2010) Daniela C Dieterich et al.   NATURE NEUROSCIENCE

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

(2010) Julia Arnds et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

(2009) Michael Wagner   Annual Review of Microbiology

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility

(2009) K. Stoecker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methods for unveiling cryptic microbial partnerships in nature

(2009) Victoria J Orphan   CURRENT OPINION IN MICROBIOLOGY

Extensive carbon isotopic heterogeneity among methane seep microbiota

(2009) Christopher H. House et al.   ENVIRONMENTAL MICROBIOLOGY

Patterns of15N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS

(2009) Victoria J. Orphan et al.   ENVIRONMENTAL MICROBIOLOGY

Geobiological investigations using secondary ion mass spectrometry: microanalysis of extant and paleo-microbial processes

(2009) V. J. ORPHAN et al.   Geobiology

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia

(2009) A. E. Dekas et al.   SCIENCE

Raman tweezers sorting of single microbial cells

(2009) Wei E. Huang et al.   Environmental Microbiology Reports

Two-color labeling of temporally defined protein populations in mammalian cells

(2008) Kimberly E. Beatty et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity

(2008) Alexander Loy et al.   ENVIRONMENTAL MICROBIOLOGY

Immunological Localization of Coenzyme M Reductase in Anaerobic Methane-Oxidizing Archaea of ANME 1 and ANME 2 Type

(2008) Christina Heller et al.   GEOMICROBIOLOGY JOURNAL

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington

(2008) Marina G Kalyuzhnaya et al.   ISME Journal

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

(2008) A. Pernthaler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA