Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation

Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E

(2016) Shaheen Sulthana et al.   RNA

The ribonuclease polynucleotide phosphorylase can interact with small regulatory RNAs in both protective and degradative modes

(2016) Katarzyna J. Bandyra et al.   RNA

Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli

(2015) Vânia Pobre et al.   BMC GENOMICS

Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing

(2015) Bashir Saadeh et al.   JOURNAL OF BACTERIOLOGY

Absence of YbeY RNase compromises the growth and enhances the virulence plasmid gene expression of Yersinia enterocolitica O:3

(2015) Katarzyna Leskinen et al.   MICROBIOLOGY-SGM

Antisense transcription of symbiotic genes in Sinorhizobium meliloti

(2015) Marta Robledo et al.   SYMBIOSIS

A Stress-Induced Small RNA Modulates Alpha-Rhizobial Cell Cycle Progression

(2015) Marta Robledo et al.   PLoS Genetics

ReadXplorer—visualization and analysis of mapped sequences

(2014) Rolf Hilker et al.   BIOINFORMATICS

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8

(2014) Hiromasa Ohyama et al.   BMC GENOMICS

Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria

(2014) Shree P Pandey et al.   BMC GENOMICS

The role of RNases in the regulation of small RNAs

(2014) Margarida Saramago et al.   CURRENT OPINION IN MICROBIOLOGY

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

(2014) Aaron Overlöper et al.   RNA Biology

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons inSinorhizobium meliloti

(2014) Omar Torres-Quesada et al.   RNA Biology

The Highly Conserved Bacterial RNase YbeY Is Essential in Vibrio cholerae, Playing a Critical Role in Virulence, Stress Regulation, and RNA Processing

(2014) Maarten Vercruysse et al.   PLoS Pathogens

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021

(2013) Jan-Philip Schlüter et al.   BMC GENOMICS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

The Escherichia coli Translation-Associated Heat Shock Protein YbeY Is Involved in rRNA Transcription Antitermination

(2013) Maya Grinwald et al.   PLoS One

Independent Activity of the Homologous Small Regulatory RNAs AbcR1 and AbcR2 in the Legume Symbiont Sinorhizobium meliloti

(2013) Omar Torres-Quesada et al.   PLoS One

Ribonuclease III mechanisms of double-stranded RNA cleavage

(2013) Allen W. Nicholson   Wiley Interdisciplinary Reviews-RNA

The bacterial protein Hfq: much more than a mere RNA-binding factor

(2012) Patricio Sobrero et al.   CRITICAL REVIEWS IN MICROBIOLOGY

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

(2012) Clayton C. Caswell et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011

(2012) Patricio Sobrero et al.   PLoS One

Non-coding sRNAs regulate virulence in the bacterial pathogen Vibrio cholerae

(2012) J. Patrick Bardill et al.   RNA Biology

The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq

(2012) J. M. Andrade et al.   RNA

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

(2011) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq

(2011) Shree P. Pandey et al.   NUCLEIC ACIDS RESEARCH

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

Crystal structure and ligand binding of the MID domain of a eukaryotic Argonaute protein

(2010) Andreas Boland et al.   EMBO REPORTS

The Heat Shock Protein YbeY Is Required for Optimal Activity of the 30S Ribosomal Subunit

(2010) A. Rasouly et al.   JOURNAL OF BACTERIOLOGY

Proteomic Alterations Explain Phenotypic Changes in Sinorhizobium meliloti Lacking the RNA Chaperone Hfq

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing

(2010) Bryan W. Davies et al.   MOLECULAR MICROBIOLOGY

Role of theSinorhizobium melilotiGlobal Regulator Hfq in Gene Regulation and Symbiosis

(2010) Mengsheng Gao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

(2010) Mark B. Stead et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

EMMA 2 – A MAGE-compliant system for the collaborative analysis and integration of microarray data

(2009) Michael Dondrup et al.   BMC BIOINFORMATICS

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Manganese Transporter MntH Is a Critical Virulence Determinant for Brucella abortus 2308 in Experimentally Infected Mice

(2009) E. S. Anderson et al.   INFECTION AND IMMUNITY

YbeY, a Heat Shock Protein Involved in Translation in Escherichia coli

(2009) A. Rasouly et al.   JOURNAL OF BACTERIOLOGY

Enhancement of the Seed-Target Recognition Step in RNA Silencing by a PIWI/MID Domain Protein

(2009) James S. Parker et al.   MOLECULAR CELL

Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data

(2008) J SERRANIA et al.   JOURNAL OF BIOTECHNOLOGY

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

(2008) Anke Becker et al.   JOURNAL OF BIOTECHNOLOGY

Sinorhizobium melilotiRegulator MucR Couples Exopolysaccharide Synthesis and Motility

(2008) Christelle Bahlawane et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics