Ribonuclease III mechanisms of double-stranded RNA cleavage

Cellular functions of the microprocessor

(2013) Sara Macias et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Ensemble Analysis of Primary MicroRNA Structure Reveals an Extensive Capacity To Deform near the Drosha Cleavage Site

(2013) Kaycee A. Quarles et al.   BIOCHEMISTRY

Effects of Nanoscale Confinement on the Functionality of Nucleic Acids: Implications for Nanomedicine

(2013) M. Castronovo et al.   CURRENT MEDICINAL CHEMISTRY

dsRNA Sensing During Viral Infection: Lessons from Plants, Worms, Insects, and Mammals

(2013) Isaque João da Silva de Faria et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Digital Imprinting of RNA Recognition and Processing on a Self-Assembled Nucleic Acid Matrix

(2013) Shiv K. Redhu et al.   Scientific Reports

Processing of virus-derived cytoplasmic primary-microRNAs

(2013) Jillian S. Shapiro   Wiley Interdisciplinary Reviews-RNA

The Loop Position of shRNAs and Pre-miRNAs Is Critical for the Accuracy of Dicer Processing In Vivo

(2012) Shuo Gu et al.   CELL

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

(2012) Ryuya Fukunaga et al.   CELL

RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence

(2012) Grégoire Masliah et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Coordinated Activities of Human Dicer Domains in Regulatory RNA Processing

(2012) Enbo Ma et al.   JOURNAL OF MOLECULAR BIOLOGY

Intrinsic Dynamics of an Extended Hydrophobic Core in the S. cerevisiae RNase III dsRBD Contributes to Recognition of Specific RNA Binding Sites

(2012) Elon Hartman et al.   JOURNAL OF MOLECULAR BIOLOGY

Modular recognition of nucleic acids by PUF, TALE and PPR proteins

(2012) Aleksandra Filipovska et al.   Molecular BioSystems

DGCR8 HITS-CLIP reveals novel functions for the Microprocessor

(2012) Sara Macias et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The molecular architecture of human Dicer

(2012) Pick-Wei Lau et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease

(2012) Kathryn M. Hastie et al.   PLoS One

The Role of Human Dicer-dsRBD in Processing Small Regulatory RNAs

(2012) Christopher Wostenberg et al.   PLoS One

Bacteriophage T7 protein kinase: Site of inhibitory autophosphorylation, and use of dephosphorylated enzyme for efficient modification of protein in vitro

(2012) Swapna Gone et al.   PROTEIN EXPRESSION AND PURIFICATION

RNase III initiates rapid degradation ofproUmRNA upon hypo-osmotic stress inEscherichia coli

(2012) Kanstantsin Kavalchuk et al.   RNA Biology

TRBP alters human precursor microRNA processing in vitro

(2012) H. Y. Lee et al.   RNA

Mutational analysis of Trypanosoma brucei editosome proteins KREPB4 and KREPB5 reveals domains critical for function

(2012) J. Carnes et al.   RNA

Evidence for a cytoplasmic microprocessor of pri-miRNAs

(2012) J. S. Shapiro et al.   RNA

Hiding the evidence: two strategies for innate immune evasion by hemorrhagic fever viruses

(2012) Kathryn M Hastie et al.   Current Opinion in Virology

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

Identification of Macrodomain Proteins as NovelO-Acetyl-ADP-ribose Deacetylases

(2011) Dawei Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Endonuclease Associations with Three Distinct Editosomes inTrypanosoma brucei

(2011) Jason Carnes et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

siRNA Repositioning for Guide Strand Selection by Human Dicer Complexes

(2011) Cameron L. Noland et al.   MOLECULAR CELL

Dicer recognizes the 5′ end of RNA for efficient and accurate processing

(2011) Jong-Eun Park et al.   NATURE

Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules

(2011) Andrew H. Babiskin et al.   NUCLEIC ACIDS RESEARCH

Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity

(2011) Andrew H. Babiskin et al.   NUCLEIC ACIDS RESEARCH

Double-Stranded RNA Resists Condensation

(2011) Li Li et al.   PHYSICAL REVIEW LETTERS

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the Lassa virus nucleoprotein reveals a dsRNA-specific 3' to 5' exonuclease activity essential for immune suppression

(2011) K. M. Hastie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer

(2011) M. B. Warf et al.   RNA

Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei

(2011) B. R. Madina et al.   RNA

Structure of a Yeast RNase III dsRBD Complex with a Noncanonical RNA Substrate Provides New Insights into Binding Specificity of dsRBDs

(2011) Zhonghua Wang et al.   STRUCTURE

Dynamic Origins of Differential RNA Binding Function in Two dsRBDs from the miRNA “Microprocessor” Complex

(2010) Christopher Wostenberg et al.   BIOCHEMISTRY

MD Simulations of the dsRBP DGCR8 Reveal Correlated Motions that May Aid pri-miRNA Binding

(2010) Christopher Wostenberg et al.   BIOPHYSICAL JOURNAL

Toward a Consensus View of Duplex RNA Flexibility

(2010) Ignacio Faustino et al.   BIOPHYSICAL JOURNAL

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

A′-form RNA helices are required for cytoplasmic mRNA transport in Drosophila

(2010) Simon L Bullock et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characterization of Aquifex aeolicus ribonuclease III and the reactivity epitopes of its pre-ribosomal RNA substrates

(2010) Zhongjie Shi et al.   NUCLEIC ACIDS RESEARCH

Structure of the dimerization domain of DiGeorge Critical Region 8

(2010) Rachel Senturia et al.   PROTEIN SCIENCE

Noncanonical cytoplasmic processing of viral microRNAs

(2010) J. S. Shapiro et al.   RNA

Ribosomal protein L3 bound to 23S precursor rRNA stimulates its maturation by Mini-III ribonuclease

(2009) Yulia Redko et al.   MOLECULAR MICROBIOLOGY

Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA

(2009) Suzette A. Pabit et al.   NUCLEIC ACIDS RESEARCH

A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing

(2009) T. S. Kroeger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the Human Dicer-TRBP Complex by Electron Microscopy

(2009) Pick-Wei Lau et al.   STRUCTURE

Heterodimer-based analysis of subunit and domain contributions to double-stranded RNA processing byEscherichia coliRNase IIIin vitro

(2008) Wenzhao Meng et al.   BIOCHEMICAL JOURNAL

Yeast Ribonuclease III Uses a Network of Multiple Hydrogen Bonds for RNA Binding and Cleavage†

(2008) Mathieu Lavoie et al.   BIOCHEMISTRY

YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity

(2008) K.-s. Kim et al.   GENES & DEVELOPMENT

Determinants for Association and Guide RNA-Directed Endonuclease Cleavage by Purified RNA Editing Complexes from Trypanosoma brucei

(2008) Alfredo Hernandez et al.   JOURNAL OF MOLECULAR BIOLOGY

Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis

(2008) Yulia Redko et al.   MOLECULAR MICROBIOLOGY