Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons inSinorhizobium meliloti

(2014) Omar Torres-Quesada et al.   RNA Biology

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis

(2013) Kai Papenfort et al.   CELL

Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation

(2013) Yi Shao et al.   EMBO JOURNAL

A small RNA activates CFA synthase by isoform-specific mRNA stabilization

(2013) Kathrin Sophie Fröhlich et al.   EMBO JOURNAL

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

The roles of bacterial and host plant factors in Agrobacterium-mediated genetic transformation

(2013) Benot Lacroix et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Physiological Consequences of Multiple-Target Regulation by the Small RNA SgrS in Escherichia coli

(2013) Y. Sun et al.   JOURNAL OF BACTERIOLOGY

Subunit δ Is the Key Player for Assembly of the H+-translocating Unit ofEscherichia coliFOF1ATP Synthase

(2013) Florian Hilbers et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens

(2013) Keunsub Lee et al.   PLoS One

Independent Activity of the Homologous Small Regulatory RNAs AbcR1 and AbcR2 in the Legume Symbiont Sinorhizobium meliloti

(2013) Omar Torres-Quesada et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA-mediated regulation of host–pathogen interactions

(2013) Jennifer F Harris et al.   Virulence

Small RNA sX13: A Multifaceted Regulator of Virulence in the Plant Pathogen Xanthomonas

(2013) Cornelius Schmidtke et al.   PLoS Pathogens

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

The csgD mRNA as a hub for signal integration via multiple small RNAs

(2012) Alex Boehm et al.   MOLECULAR MICROBIOLOGY

Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308

(2012) Clayton C. Caswell et al.   MOLECULAR MICROBIOLOGY

An archaeal sRNA targeting cis - and trans -encoded mRNAs via two distinct domains

(2012) Dominik Jäger et al.   NUCLEIC ACIDS RESEARCH

Agrobacterium tumefaciens recognizes its host environment using ChvE to bind diverse plant sugars as virulence signals

(2012) X. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ

(2012) N. N. Mank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

(2012) Ina Wilms et al.   RNA Biology

Receptor–transporter interactions of canonical ATP-binding cassette import systems in prokaryotes

(2011) Erwin Schneider et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

(2011) Cynthia M. Sharma et al.   MOLECULAR MICROBIOLOGY

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

Circuitry linking the Csr and stringent response global regulatory systems

(2011) Adrianne N. Edwards et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

(2011) Kathrin S. Fröhlich et al.   NUCLEIC ACIDS RESEARCH

The small RNA SgrS controls sugar–phosphate accumulation by regulating multiple PTS genes

(2011) Jennifer B. Rice et al.   NUCLEIC ACIDS RESEARCH

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

(2010) Maarten Vercruysse et al.   BMC GENOMICS

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation

(2010) Andrea Pitzschke et al.   EMBO JOURNAL

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

A Conserved Mechanism of GABA Binding and Antagonism Is Revealed by Structure-Function Analysis of the Periplasmic Binding Protein Atu2422 inAgrobacterium tumefaciens

(2010) Sara Planamente et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic and transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant

(2010) Sonja Klüsener et al.   MOLECULAR GENETICS AND GENOMICS

Reprogramming of anaerobic metabolism by the FnrS small RNA

(2010) Sylvain Durand et al.   MOLECULAR MICROBIOLOGY

Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica

(2010) Roberto Balbontín et al.   MOLECULAR MICROBIOLOGY

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

(2010) K. Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A small RNA promotes siderophore production through transcriptional and metabolic remodeling

(2010) H. Salvail et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti

(2009) Björn Voss et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Activation of gene expression by small RNA

(2009) Kathrin S. Fröhlich et al.   CURRENT OPINION IN MICROBIOLOGY

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

(2009) Guillaume Desnoyers et al.   EMBO JOURNAL

Molecular Basis of ChvE Function in Sugar Binding, Sugar Utilization, and Virulence in Agrobacterium tumefaciens

(2009) F. He et al.   JOURNAL OF BACTERIOLOGY

Role of the sRNA GcvB in regulation of cycA in Escherichia coli

(2009) S. C. Pulvermacher et al.   MICROBIOLOGY-SGM

Regulatory RNAs in prokaryotes: here, there and everywhere

(2009) Franz Narberhaus et al.   MOLECULAR MICROBIOLOGY

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

(2009) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

(2009) Verena Pfeiffer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level

(2009) Kai Papenfort et al.   RESEARCH IN MICROBIOLOGY

Cloning, purification, crystallization and preliminary X-ray analysis of a bacterial GABA receptor with a Venus flytrap fold

(2008) Solange Moréra et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

(2008) Claudio Valverde et al.   BMC GENOMICS

Comparative transcriptome analysis ofAgrobacterium tumefaciensin response to plant signal salicylic acid, indole-3-acetic acid and γ-amino butyric acid reveals signalling cross-talk andAgrobacterium-plant co-evolution

(2008) Ze-Chun Yuan et al.   CELLULAR MICROBIOLOGY

Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation

(2008) Marie Bouvier et al.   MOLECULAR CELL

The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

(2008) Maude Guillier et al.   NUCLEIC ACIDS RESEARCH

Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics studies - COPD biomarker discovery study

(2008) Julia E. Bandow et al.   PROTEOMICS