Distinct assembly processes and environmental adaptation of abundant and rare archaea in Arctic marine sediments

Bioaccumulation and risk assessment of potential toxic elements in the soil-vegetable system as influenced by historical wastewater irrigation

(2023) Xinling Ruan et al.   AGRICULTURAL WATER MANAGEMENT

Effects of salinity on anoxic–oxic system performance, microbial community dynamics and co-occurrence network during treating wastewater

(2023) Hui Chen et al.   CHEMICAL ENGINEERING JOURNAL

Ecological stability of microbial communities in Lake Donghu regulated by keystone taxa

(2022) Shengwei Liu et al.   ECOLOGICAL INDICATORS

Distinct strategies of the habitat generalists and specialists in sediment of Tibetan lakes

(2022) Qi Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial distribution and risk assessment of metal(loid)s in marine sediments in the Arctic Ocean and Bering Sea

(2022) Hui Zheng et al.   MARINE POLLUTION BULLETIN

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils

(2022) Liyang Yang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rare biosphere regulates the planktonic and sedimentary bacteria by disparate ecological processes in a large source water reservoir

(2022) Chenyuan Dang et al.   WATER RESEARCH

Community assembly of microbial habitat generalists and specialists in urban aquatic ecosystems explained more by habitat type than pollution gradient

(2022) Mamun Abdullah Al et al.   WATER RESEARCH

Similar geographic patterns but distinct assembly processes of abundant and rare bacterioplankton communities in river networks of the Taihu Basin

(2022) Tao Zhang et al.   WATER RESEARCH

How microorganisms tell the truth of potentially toxic elements pollution in environment

(2022) Mingzhu Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

Broader environmental adaptation of rare rather than abundant bacteria in reforestation succession soil

(2022) Zhibin He et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Temperature mediated the balance between stochastic and deterministic processes and reoccurrence of microbial community during treating aniline wastewater

(2022) Hui Chen et al.   WATER RESEARCH

Environmental heterogeneity mediated prokaryotic community variations in marine sediments

(2022) Jianxing Sun et al.   ECOHYDROLOGY & HYDROBIOLOGY

Temporal change of prokaryotic community in surface sediments of the Chukchi Sea

(2022) Jianxing Sun et al.   ECOHYDROLOGY & HYDROBIOLOGY

Groundwater depth regulates assembly processes of abundant and rare bacterial communities across arid inland river basin

(2022) Yin Wang et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Deciphering the diversity patterns and community assembly of rare and abundant bacterial communities in a wetland system

(2022) Yan Yang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Contrasting archaeal and bacterial community assembly processes and the importance of rare taxa along a depth gradient in shallow coastal sediments

(2022) Xianzhe Gong et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic insights into the metabolic and ecological functions of abundant deep-sea hydrothermal vent DPANN archaea

(2021) Ruining Cai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental adaptation is stronger for abundant rather than rare microorganisms in wetland soils from the Qinghai‐Tibet Plateau

(2021) Wenjie Wan et al.   MOLECULAR ECOLOGY

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Linking phylogenetic niche conservatism to soil archaeal biogeography, community assembly and species coexistence

(2021) Shuo Jiao et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Vertical diversity and association pattern of total, abundant and rare microbial communities in deep‐sea sediments

(2021) Yunhui Zhang et al.   MOLECULAR ECOLOGY

Bridging Rare and Abundant Bacteria with Ecosystem Multifunctionality in Salinized Agricultural Soils: from Community Diversity to Environmental Adaptation

(2021) Wenjie Wan et al.   mSystems

Soil pH and nutrients shape the vertical distribution of microbial communities in an alpine wetland

(2021) Enze Kang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Study on the spatial distribution of ureolytic microorganisms in farmland soil around tailings with different heavy metal pollution

(2021) Xuesong Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

(2021) Yuanyuan Mo et al.   Microbiome

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments

(2021) Zhi-Feng Zhang et al.   mSystems

Distinct Responses of Rare and Abundant Microbial Taxa to In Situ Chemical Stabilization of Cadmium-Contaminated Soil

(2021) Min Xu et al.   mSystems

Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils

(2020) Mukan Ji et al.   ENVIRONMENTAL MICROBIOLOGY

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

(2020) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Effects of heavy metals on microbial communities in sediments and establishment of bioindicators based on microbial taxa and function for environmental monitoring and management

(2020) Changchao Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effectively reducing the bioavailability and leachability of heavy metals in sediment and improving sediment properties with a low-cost composite

(2020) Xiaoyu Ma et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

(2020) Daliang Ning et al.   Nature Communications

Biogeographic pattern of bacterioplanktonic community and potential function in the Yangtze River: Roles of abundant and rare taxa

(2020) Yu Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Spatial patterns and co-occurrence networks of microbial communities related to environmental heterogeneity in deep-sea surface sediments around Yap Trench, Western Pacific Ocean

(2020) Chenru Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Stronger environmental adaptation of rare rather than abundant bacterioplankton in response to dredging in eutrophic Lake Nanhu (Wuhan, China)

(2020) Wenjie Wan et al.   WATER RESEARCH

Bacterial community assembly in a typical estuarine marsh with multiple environmental gradients

(2019) Zhiyuan Yao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California

(2019) Sabah Ul-Hasan et al.   PLoS One

Dominant role of abundant rather than rare bacterial taxa in maintaining agro-soil microbiomes under environmental disturbances

(2019) Shuo Jiao et al.   CHEMOSPHERE

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

The spatial and seasonal variations of bacterial community structure and influencing factors in river sediments

(2019) Mingzhu Zhang et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Interaction and assembly processes of abundant and rare microbial communities during a diatom bloom process

(2019) Huajun Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Response of ammonia oxidizing archaea and bacteria to decabromodiphenyl ether and copper contamination in river sediments

(2018) Linqiong Wang et al.   CHEMOSPHERE

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Unrevealing variation of microbial communities and correlation with environmental variables in a full culture-cycle of Undaria pinnatifida

(2018) Zelong Zhao et al.   MARINE ENVIRONMENTAL RESEARCH

Biogeographic distribution of bacterial, archaeal and methanogenic communities and their associations with methanogenic capacity in Chinese wetlands

(2018) Jie Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

(2018) Xiaobo Liu et al.   Microbiome

Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China

(2018) Yu-Rong Liu et al.   Microbiome

Response of freshwater sediment archaeal community to metal spill

(2018) Qingwei Guo et al.   CHEMOSPHERE

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

(2017) Wenxue Wu et al.   ENVIRONMENTAL MICROBIOLOGY

Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor

(2017) Alma E Parada et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

(2017) Anja Spang et al.   SCIENCE

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

(2017) Bradley B. Tolar et al.   Environmental Microbiology Reports

Transport of trace metals (Mn, Fe, Ni, Zn and Cd) in the western Arctic Ocean (Chukchi Sea and Canada Basin) in late summer 2012

(2016) Yoshiko Kondo et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Using in situ bacterial communities to monitor contaminants in river sediments

(2016) Yuwei Xie et al.   ENVIRONMENTAL POLLUTION

Copper and zinc, but not other priority toxic metals, pose risks to native aquatic species in a large urban lake in Eastern China

(2016) Zhiyou Fu et al.   ENVIRONMENTAL POLLUTION

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

The biogeography of soil archaeal communities on the eastern Tibetan Plateau

(2016) Yu Shi et al.   Scientific Reports

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

(2015) Jacob A Cram et al.   ISME Journal

Bacterial antimicrobial metal ion resistance

(2015) Jon L. Hobman et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

‘Rare biosphere’ bacteria as key phenanthrene degraders in coastal seawaters

(2014) Caroline Sauret et al.   ENVIRONMENTAL POLLUTION

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

A new method for detecting and interpreting biodiversity and ecological community thresholds

(2010) Matthew E. Baker et al.   Methods in Ecology and Evolution

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Diversity and Abundance of Ammonia-Oxidizing Archaea and Bacteria in Qinghai Lake, Northwestern China

(2009) Hongchen Jiang et al.   GEOMICROBIOLOGY JOURNAL

Archaeal diversity and a gene for ammonia oxidation are coupled to oceanic circulation

(2008) Pierre E. Galand et al.   ENVIRONMENTAL MICROBIOLOGY