Community assembly of microbial habitat generalists and specialists in urban aquatic ecosystems explained more by habitat type than pollution gradient

DNA metabarcoding reveals the significant influence of anthropogenic effects on microeukaryotic communities in urban waterbodies

(2021) Mamun Abdullah Al et al.   ENVIRONMENTAL POLLUTION

Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir

(2021) Pascaline Nyirabuhoro et al.   FEMS MICROBIOLOGY ECOLOGY

Co-existing water and sediment bacteria are driven by contrasting environmental factors across glacier-fed aquatic systems

(2021) Liyan Zhang et al.   WATER RESEARCH

Changes in protist communities in drainages across the Pearl River Delta under anthropogenic influence

(2021) Keshu Zou et al.   WATER RESEARCH

Tracking microeukaryotic footprint in a peri-urban watershed, China through machine-learning approaches

(2021) Mahmoud Gad et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions

(2020) Máté Vass et al.   Scientific Reports

Strength of species interactions determines biodiversity and stability in microbial communities

(2020) Christoph Ratzke et al.   Nature Ecology & Evolution

Distinct mechanisms underlying the assembly of microeukaryotic generalists and specialists in an anthropogenically impacted river

(2020) Mahmoud Gad et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over 6 years in two subtropical reservoirs

(2019) Lemian Liu et al.   ISME Journal

A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

(2019) Jiarui Chen et al.   Microbiome

Determination of vertical and horizontal assemblage drivers of bacterial community in a heavily polluted urban river

(2019) Wenlong Zhang et al.   WATER RESEARCH

Diversity Distribution and Assembly Mechanisms of Planktonic and Benthic Microeukaryote Communities in Intertidal Zones of Southeast Fujian, China

(2019) Jie Kong et al.   Frontiers in Microbiology

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

A critical review of the appearance of black-odorous waterbodies in China and treatment methods

(2019) Jingxin Cao et al.   JOURNAL OF HAZARDOUS MATERIALS

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

(2018) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Urban stream microbial communities show resistance to pharmaceutical exposure

(2018) E. J. Rosi et al.   Ecosphere

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The relationships between odors and environmental factors at bloom and non-bloom area in Lake Taihu, China

(2018) Deng Xuwei et al.   CHEMOSPHERE

Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China

(2017) Jingqiu Liao et al.   LIMNOLOGY AND OCEANOGRAPHY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

DNA metabarcoding reveals that 200-μ m-size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes

(2017) Lemian Liu et al.   Molecular Ecology Resources

Black-odor water analysis and heavy metal distribution of Yitong River in Northeast China

(2017) Xiyan Ji et al.   WATER SCIENCE AND TECHNOLOGY

Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function

(2017) et al.   Processes

Occurrence and Potential Biological Effects of Amphetamine on Stream Communities

(2016) Sylvia S. Lee et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Distributions, abundances and activities of microbes associated with the nitrogen cycle in riparian and stream sediments of a river tributary

(2016) Haryun Kim et al.   WATER RESEARCH

Distinct Factors Shape Aquatic and Sedimentary Microbial Community Structures in the Lakes of Western China

(2016) Jian Yang et al.   Frontiers in Microbiology

Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient

(2016) C. Monard et al.   Scientific Reports

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment

(2015) Mohammad Bahram et al.   ISME Journal

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Risk of Local Extinction of Odonata Freshwater Habitat Generalists and Specialists

(2014) JUKKA SUHONEN et al.   CONSERVATION BIOLOGY

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

The dissimilarity of species interaction networks

(2012) Timothée Poisot et al.   ECOLOGY LETTERS

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Regional invariance among microbial communities

(2009) Örjan Östman et al.   ECOLOGY LETTERS

Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community

(2009) Jane M Yagi et al.   ISME Journal

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One