Rare biosphere regulates the planktonic and sedimentary bacteria by disparate ecological processes in a large source water reservoir

Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika

(2021) Patricia Q. Tran et al.   ISME Journal

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir

(2021) Pascaline Nyirabuhoro et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonal dynamics in the number and composition of coliform bacteria in drinking water reservoirs

(2021) Carolin Reitter et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Impacts of municipal wastewater treatment plant discharge on microbial community structure and function of the receiving river in Northwest Tibetan Plateau

(2021) Jiawen Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Factors affecting seasonal variation of microbial community structure in Hulun Lake, China

(2021) Yongquan Shang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Response of microbial nitrogen transformation processes to antibiotic stress in a drinking water reservoir

(2021) Chenyuan Dang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Untangling Microbiota Diversity and Assembly Patterns in the World's Largest Water Diversion Canal

(2021) Lu Zhang et al.   WATER RESEARCH

Spatiotemporal dynamics in microbial communities mediating biogeochemical cycling of nutrients across the Xiaowan Reservoir in Lancang River

(2021) Jiaxin Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Community Compositions of Phytoplankton and Eukaryotes during the Mixing Periods of a Drinking Water Reservoir: Dynamics and Interactions

(2020) Miaomiao Yan et al.   International Journal of Environmental Research and Public Health

Biogeographic distribution of comammox bacteria in diverse terrestrial habitats

(2020) Yao Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system

(2020) Paula Huber et al.   ISME Journal

Metagenomic profiling of antibiotic resistance genes and their associations with bacterial community during multiple disinfection regimes in a full-scale drinking water treatment plant

(2020) Shuyu Jia et al.   WATER RESEARCH

Long-term (2002–2017) impacts of Danjiangkou dam on thermal regimes of downstream Han River (China) using Landsat thermal infrared imagery

(2020) Jiayang Zhao et al.   JOURNAL OF HYDROLOGY

Seven-year dynamics of testate amoeba communities driven more by stochastic than deterministic processes in two subtropical reservoirs

(2020) Wenping Wang et al.   WATER RESEARCH

Bioavailable metal(loid)s and physicochemical features co-mediating microbial communities at combined metal(loid) pollution sites

(2020) Jiawen Wang et al.   CHEMOSPHERE

Annual bacterial community cycle in a seasonally ice-covered river reflects environmental and climatic conditions

(2019) Perrine Cruaud et al.   LIMNOLOGY AND OCEANOGRAPHY

High-throughput DNA sequencing reveals the dominance of pico- and other filamentous cyanobacteria in an urban freshwater Lake

(2019) Hanyan Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Vertical Distribution of Microplastics in the Water Column and Surficial Sediment from the Milwaukee River Basin to Lake Michigan

(2019) Peter L. Lenaker et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Chemical and microbial diversity covary in fresh water to influence ecosystem functioning

(2019) Andrew J. Tanentzap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Field Research on Mixing Aeration in a Drinking Water Reservoir: Performance and Microbial Community Structure

(2019) Zizhen Zhou et al.   International Journal of Environmental Research and Public Health

Rare rather than abundant microbial communities drive the effects of long-term greenhouse cultivation on ecosystem functions in subtropical agricultural soils

(2019) Mengdi Xue et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River

(2019) Jiawen Wang et al.   Microbiome

Dominant role of ammonia-oxidizing bacteria in nitrification due to ammonia accumulation in sediments of Danjiangkou reservoir, China

(2018) Chenyuan Dang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

(2018) Tang Liu et al.   Microbiome

Variations of Bacterial Community Composition and Functions in an Estuary Reservoir during Spring and Summer Alternation

(2018) Zheng Xu et al.   Toxins

Water Temperature Dynamics in a Complex of Reservoirs and Its Effect on the Temperature Patterns of a Mountain River

(2018) Łukasz Wiejaczka et al.   Water Resources

Antibiotics in water and sediments of Danjiangkou Reservoir, China: Spatiotemporal distribution and indicator screening

(2018) Si Li et al.   ENVIRONMENTAL POLLUTION

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Spatial and seasonal distributions of bacterioplankton in the Pearl River Estuary: The combined effects of riverine inputs, temperature, and phytoplankton

(2017) Jiajun Li et al.   MARINE POLLUTION BULLETIN

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Water or sediment? Partitioning the role of water column and sediment chemistry as drivers of macroinvertebrate communities in an austral South African stream

(2017) Tatenda Dalu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comammox in drinking water systems

(2017) Yulin Wang et al.   WATER RESEARCH

Evaluating the Scale Effect of Soil Erosion Using Landscape Pattern Metrics and Information Entropy: A Case Study in the Danjiangkou Reservoir Area, China

(2017) Qiuping Huang et al.   Sustainability

Shifts in diversity and function of lake bacterial communities upon glacier retreat

(2016) Hannes Peter et al.   ISME Journal

Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks

(2016) Juan Pablo Niño-García et al.   ISME Journal

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment

(2015) Markus V. Lindh et al.   AMBIO

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial Community Composition in Three Freshwater Reservoirs of Different Alkalinity and Trophic Status

(2014) Marc Llirós et al.   PLoS One

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Sediment Enzyme Activities and Microbial Community Diversity in an Oligotrophic Drinking Water Reservoir, Eastern China

(2013) Haihan Zhang et al.   PLoS One

Seasonal Dynamics of the Bacterial Community in Lake Namco, the Largest Tibetan Lake

(2012) Yongqin Liu et al.   GEOMICROBIOLOGY JOURNAL

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microorganisms and their roles in fundamental biogeochemical cycles

(2011) Eugene L Madsen   CURRENT OPINION IN BIOTECHNOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Hypotheses on the role of the protistan rare biosphere in a changing world

(2009) DA Caron et al.   AQUATIC MICROBIAL ECOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Mercury mass balance study in Wujiangdu and Dongfeng Reservoirs, Guizhou, China

(2009) Xinbin Feng et al.   ENVIRONMENTAL POLLUTION

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY