Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

Sediment bacteria in an urban stream: Spatiotemporal patterns in community composition

(2018) Alescia A. Roberto et al.   WATER RESEARCH

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

(2017) Eric Capo et al.   ENVIRONMENTAL MICROBIOLOGY

The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation

(2017) Wenjing Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Strong impact of anthropogenic contamination on the co-occurrence patterns of a riverine microbial community

(2017) Anyi Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

(2017) Wenxue Wu et al.   ENVIRONMENTAL MICROBIOLOGY

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

Rare symbionts may contribute to the resilience of coral–algal assemblages

(2017) Maren Ziegler et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

DNA metabarcoding reveals that 200-μ m-size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes

(2017) Lemian Liu et al.   Molecular Ecology Resources

Disturbance-induced phytoplankton regime shifts and recovery of cyanobacteria dominance in two subtropical reservoirs

(2017) Jun R. Yang et al.   WATER RESEARCH

Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China

(2017) Weidong Chen et al.   Frontiers in Microbiology

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

The interaction between cyanobacteria and zooplankton in a more eutrophic world

(2016) Kemal Ali Ger et al.   HARMFUL ALGAE

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton

(2016) Dayong Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Phytoplankton Communities Exhibit a Stronger Response to Environmental Changes than Bacterioplankton in Three Subtropical Reservoirs

(2015) Lemian Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment

(2015) Mohammad Bahram et al.   ISME Journal

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

Evidence for an active rare biosphere within freshwater protists community

(2015) Didier Debroas et al.   MOLECULAR ECOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Rarity in aquatic microbes: placing protists on the map

(2015) Ramiro Logares et al.   RESEARCH IN MICROBIOLOGY

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Temporal patterns of rarity provide a more complete view of microbial diversity

(2015) Ashley Shade et al.   TRENDS IN MICROBIOLOGY

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Cyanobacteria dominance influences resource use efficiency and community turnover in phytoplankton and zooplankton communities

(2014) Christopher T. Filstrup et al.   ECOLOGY LETTERS

Interspecific allelopathy in cyanobacteria: Cylindrospermopsin and Cylindrospermopsis raciborskii effect on the growth and metabolism of Microcystis aeruginosa

(2014) Piotr Rzymski et al.   HARMFUL ALGAE

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

Water Stratification Affects the Microeukaryotic Community in a Subtropical Deep Reservoir

(2013) Zheng Yu et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls

(2013) Hans W. Paerl et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Patterns in the Composition of Microbial Communities from a Subtropical River: Effects of Environmental, Spatial and Temporal Factors

(2013) Lemian Liu et al.   PLoS One

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps

(2012) David A. Caron et al.   JOURNAL OF PLANKTON RESEARCH

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change

(2012) T. G. Evans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microbial eukaryotic community in response to Microcystis spp. bloom, as assessed by an enclosure experiment in Lake Taihu, China

(2010) Meijun Chen et al.   FEMS MICROBIOLOGY ECOLOGY

Parasitic chytrids could promote copepod survival by mediating material transfer from inedible diatoms

(2010) Maiko Kagami et al.   HYDROBIOLOGIA

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Hypotheses on the role of the protistan rare biosphere in a changing world

(2009) DA Caron et al.   AQUATIC MICROBIAL ECOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Scale-Free Networks: A Decade and Beyond

(2009) Albert-László Barabási   SCIENCE

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

High bacterivory by the smallest phytoplankton in the North Atlantic Ocean

(2008) Mikhail V. Zubkov et al.   NATURE