Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
出版年份 2023 全文链接
标题
Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
作者
关键词
-
出版物
NATURE GENETICS
Volume 55, Issue 4, Pages 631-639
出版商
Springer Science and Business Media LLC
发表日期
2023-03-28
DOI
10.1038/s41588-023-01349-3
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identification of shared tumor epitopes from endogenous retroviruses inducing high-avidity cytotoxic T cells for cancer immunotherapy
- (2022) Paola Bonaventura et al. Science Advances
- LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint
- (2022) Wilson McKerrow et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer
- (2022) Mihir Rajurkar et al. Cancer Discovery
- CAR T cells in solid tumors: challenges and opportunities
- (2021) Faroogh Marofi et al. Stem Cell Research & Therapy
- An atlas of transposable element-derived alternative splicing in cancer
- (2020) Evan A. Clayton et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- p53 directly represses human LINE1 transposons
- (2020) Bhavana Tiwari et al. GENES & DEVELOPMENT
- BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies
- (2019) Andre Lamurias et al. BMC BIOINFORMATICS
- Transposable elements drive widespread expression of oncogenes in human cancers
- (2019) Hyo Sik Jang et al. NATURE GENETICS
- LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly
- (2019) Jan Attig et al. GENOME RESEARCH
- Transposable elements in human genetic disease
- (2019) Lindsay M. Payer et al. NATURE REVIEWS GENETICS
- Transposable element expression in tumors is associated with immune infiltration and increased antigenicity
- (2019) Yu Kong et al. Nature Communications
- DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load
- (2019) Hyunchul Jung et al. Nature Communications
- Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment
- (2019) Alice Newey et al. Journal for ImmunoTherapy of Cancer
- Comprehensive Characterization of Cancer Driver Genes and Mutations
- (2018) Matthew H. Bailey et al. CELL
- The Immune Landscape of Cancer
- (2018) Vésteinn Thorsson et al. IMMUNITY
- CAR T cell immunotherapy for human cancer
- (2018) Carl H. June et al. SCIENCE
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
- (2018) André Kahles et al. CANCER CELL
- Transposons, p53 and Genome Security
- (2018) Bhavana Tiwari et al. TRENDS IN GENETICS
- CAR T Cells in Solid Tumors: Blueprints for Building Effective Therapies
- (2018) Hannah M. Knochelmann et al. Frontiers in Immunology
- The chromatin accessibility landscape of primary human cancers
- (2018) M. Ryan Corces et al. SCIENCE
- Noncoding regions are the main source of targetable tumor-specific antigens
- (2018) Céline M. Laumont et al. Science Translational Medicine
- Identification of a core TP53 transcriptional program with highly distributed tumor suppressive activity
- (2017) Zdenek Andrysik et al. GENOME RESEARCH
- NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
- (2017) Vanessa Jurtz et al. JOURNAL OF IMMUNOLOGY
- DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
- (2017) David Brocks et al. NATURE GENETICS
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies
- (2017) Imad Abugessaisa et al. Scientific Data
- P53 and the defenses against genome instability caused by transposons and repetitive elements
- (2016) Arnold J. Levine et al. BIOESSAYS
- Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer
- (2016) Hui Zhang et al. CELL
- Making Better Chimeric Antigen Receptors for Adoptive T-cell Therapy
- (2016) M. V. Maus et al. CLINICAL CANCER RESEARCH
- Mass spectrometry-based antigen discovery for cancer immunotherapy
- (2016) Michal Bassani-Sternberg et al. CURRENT OPINION IN IMMUNOLOGY
- Proteogenomics connects somatic mutations to signalling in breast cancer
- (2016) Philipp Mertins et al. NATURE
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
- (2016) Stefka Tyanova et al. Nature Protocols
- Endogenous retroviral promoter exaptation in human cancer
- (2016) Artem Babaian et al. Mobile DNA
- DNA-Demethylating Agents Target Colorectal Cancer Cells by Inducing Viral Mimicry by Endogenous Transcripts
- (2015) David Roulois et al. CELL
- Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses
- (2015) Katherine B. Chiappinelli et al. CELL
- Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation
- (2015) Michal Bassani-Sternberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Alternative transcription initiation leads to expression of a novel ALK isoform in cancer
- (2015) Thomas Wiesner et al. NATURE
- Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma
- (2015) A Babaian et al. ONCOGENE
- TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
- (2015) Jelle Scholtalbers et al. Genome Medicine
- A comprehensive transcriptional portrait of human cancer cell lines
- (2014) Christiaan Klijn et al. NATURE BIOTECHNOLOGY
- Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma
- (2014) F. E. Lock et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs
- (2012) K. I. Leonova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HLA typing from RNA-Seq sequence reads
- (2012) Sebastian Boegel et al. Genome Medicine
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
- (2010) Björn Lamprecht et al. NATURE MEDICINE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Epigenetics in cancer
- (2009) S. Sharma et al. CARCINOGENESIS
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