Transposable element expression in tumors is associated with immune infiltration and increased antigenicity
出版年份 2019 全文链接
标题
Transposable element expression in tumors is associated with immune infiltration and increased antigenicity
作者
关键词
-
出版物
Nature Communications
Volume 10, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-11-19
DOI
10.1038/s41467-019-13035-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Personalized vaccines for cancer immunotherapy
- (2018) Ugur Sahin et al. SCIENCE
- Human transposable elements in Repbase: genomic footprints from fish to humans
- (2018) Kenji K. Kojima Mobile DNA
- The case for not masking away repetitive DNA
- (2018) R. Keith Slotkin Mobile DNA
- TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells
- (2018) Sanjeev Mariathasan et al. NATURE
- Intron retention is a source of neoepitopes in cancer
- (2018) Alicia C Smart et al. NATURE BIOTECHNOLOGY
- Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma
- (2018) Christof C. Smith et al. JOURNAL OF CLINICAL INVESTIGATION
- Insertion-and-deletion-derived tumour-specific neoantigens and the immunogenic phenotype: a pan-cancer analysis
- (2017) Samra Turajlic et al. LANCET ONCOLOGY
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Detection of an Immunogenic HERV-E Envelope with Selective Expression in Clear Cell Kidney Cancer
- (2016) Elena Cherkasova et al. CANCER RESEARCH
- Combining Epigenetic and Immunotherapy to Combat Cancer
- (2016) Katherine B. Chiappinelli et al. CANCER RESEARCH
- Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy
- (2016) Bracha Shraibman et al. MOLECULAR & CELLULAR PROTEOMICS
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Targeting the cancer epigenome for therapy
- (2016) Peter A. Jones et al. NATURE REVIEWS GENETICS
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- DNA Damage Response and Immune Defense: Links and Mechanisms
- (2016) Rania Nakad et al. Frontiers in Genetics
- Inhibition of DNA Methylation Suppresses Intestinal Tumor Organoids by Inducing an Anti-Viral Response
- (2016) Yoshimasa Saito et al. Scientific Reports
- Pluripotency and the endogenous retrovirus HERVH: Conflict or serendipity?
- (2015) Zsuzsanna Izsvák et al. BIOESSAYS
- TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
- (2015) Ying Jin et al. BIOINFORMATICS
- Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity
- (2015) Michael S. Rooney et al. CELL
- DNA-Demethylating Agents Target Colorectal Cancer Cells by Inducing Viral Mimicry by Endogenous Transcripts
- (2015) David Roulois et al. CELL
- Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
- (2015) Jonathan Göke et al. Cell Stem Cell
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression
- (2015) T. Hung et al. SCIENCE
- Human endogenous retrovirus-K contributes to motor neuron disease
- (2015) Wenxue Li et al. Science Translational Medicine
- Regularization Paths for Generalized Linear Models via Coordinate Descent
- (2015) Jerome Friedman et al. Journal of Statistical Software
- Transcriptional landscape of repetitive elements in normal and cancer human cells
- (2014) Steven W Criscione et al. BMC GENOMICS
- DNA methylation dynamics of the human preimplantation embryo
- (2014) Zachary D. Smith et al. NATURE
- Spectrum of diverse genomic alterations define non–clear cell renal carcinoma subtypes
- (2014) Steffen Durinck et al. NATURE GENETICS
- The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
- (2014) Xinyi Lu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Active Transposition in Genomes
- (2012) Cheng Ran Lisa Huang et al. Annual Review of Genetics
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders
- (2012) Wanhe Li et al. PLoS One
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
- (2011) Jing Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
- Aberrant Overexpression of Satellite Repeats in Pancreatic and Other Epithelial Cancers
- (2011) D. T. Ting et al. SCIENCE
- A revised nomenclature for transcribed human endogenous retroviral loci
- (2011) Jens Mayer et al. Mobile DNA
- Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
- (2010) Pan Du et al. BMC BIOINFORMATICS
- SVA retrotransposons: Evolution and genetic instability
- (2010) Dustin C. Hancks et al. SEMINARS IN CANCER BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- lumi: a pipeline for processing Illumina microarray
- (2008) P. Du et al. BIOINFORMATICS
- Regression of human kidney cancer following allogeneic stem cell transplantation is associated with recognition of an HERV-E antigen by T cells
- (2008) Yoshiyuki Takahashi et al. JOURNAL OF CLINICAL INVESTIGATION
- Conditional MHC class I ligands and peptide exchange technology for the human MHC gene products HLA-A1, -A3, -A11, and -B7
- (2008) A. H. Bakker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started