标题
Co-diversification of an intestinal Mycoplasma and its salmonid host
作者
关键词
-
出版物
ISME Journal
Volume 17, Issue 5, Pages 682-692
出版商
Springer Science and Business Media LLC
发表日期
2023-02-17
DOI
10.1038/s41396-023-01379-z
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout ( Oncorhynchus mykiss )
- (2022) Jacob Agerbo Rasmussen et al. JOURNAL OF APPLIED MICROBIOLOGY
- A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)
- (2022) Jacob Agerbo Rasmussen et al. Microbiome
- How reliably do metagenome-assembled genomes (MAGs) represent natural populations? Insights from comparing MAGs against isolate genomes derived from the same fecal sample
- (2021) Alexandra Meziti et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Intestinal microbial communities of rainbow trout (Oncorhynchus mykiss) may be improved by feeding a Hermetia illucens meal/low-fishmeal diet
- (2021) Simona Rimoldi et al. FISH PHYSIOLOGY AND BIOCHEMISTRY
- Gnotobiotic rainbow trout (Oncorhynchus mykiss) model reveals endogenous bacteria that protect against Flavobacterium columnare infection
- (2021) David Pérez-Pascual et al. PLoS Pathogens
- Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
- (2021) Jacob A. Rasmussen et al. Communications Biology
- Genome erosion and evidence for an intracellular niche – exploring the biology of mycoplasmas in Atlantic salmon
- (2021) B. Cheaib et al. AQUACULTURE
- An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
- (2021) Fei Xie et al. Microbiome
- AdImpute: An Imputation Method for Single-Cell RNA-Seq Data Based on Semi-Supervised Autoencoders
- (2021) Li Xu et al. Frontiers in Genetics
- A full factorial design to investigate interactions of variable essential amino acids, trace minerals and vitamins on Atlantic salmon smoltification and post transfer performance
- (2021) Katerina Kousoulaki et al. Aquaculture Reports
- Effects of feed ration and temperature on Chinook salmon (Oncorhynchus tshawytscha) microbiota in freshwater recirculating aquaculture systems
- (2021) Ruixiang Zhao et al. AQUACULTURE
- Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
- (2021) Tom O. Delmont et al. ISME Journal
- Gut Microbiome of Wild Baltic Salmon (Salmo salar L.) Parr
- (2021) Vesta Skrodenytė-Arbačiauskienė et al. MICROBIAL ECOLOGY
- Disentangling host–microbiota complexity through hologenomics
- (2021) Antton Alberdi et al. NATURE REVIEWS GENETICS
- Neutral processes dominate microbial community assembly in Atlantic salmon, Salmo salar
- (2020) C Heys et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Salinity and fish age affect the gut microbiota of farmed Chinook salmon (Oncorhynchus tshawytscha)
- (2020) Ruixiang Zhao et al. AQUACULTURE
- Co-evolution and Co-speciation of Host-Gut Bacteria Systems
- (2020) Mathieu Groussin et al. Cell Host & Microbe
- Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
- (2020) Lasse Nyholm et al. iScience
- Diversity of gut microbiomes in marine fishes is shaped by host‐related factors
- (2020) Qi Huang et al. MOLECULAR ECOLOGY
- The structural variation landscape in 492 Atlantic salmon genomes
- (2020) Alicia C. Bertolotti et al. Nature Communications
- Community-led, integrated, reproducible multi-omics with anvi’o
- (2020) A. Murat Eren et al. Nature Microbiology
- Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattle
- (2019) Beatriz Delgado et al. Scientific Reports
- GToTree: a user-friendly workflow for phylogenomics
- (2019) Michael D Lee BIOINFORMATICS
- Adaptive Evolution within Gut Microbiomes of Healthy People
- (2019) Shijie Zhao et al. Cell Host & Microbe
- Switching on the light: using metagenomic shotgun sequencing to characterize the intestinal microbiome of Atlantic cod
- (2019) Even Sannes Riiser et al. ENVIRONMENTAL MICROBIOLOGY
- Population genetic analysis reveals a geographically limited transition zone between two genetically distinct Atlantic salmon lineages in Norway
- (2019) Vidar Wennevik et al. Ecology and Evolution
- Prevalence and genotypes of infectious salmon anaemia virus (ISAV) in returning wild Atlantic salmon ( Salmo salar L.) in northern Norway
- (2019) Abdullah Sami Madhun et al. JOURNAL OF FISH DISEASES
- Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
- (2019) Nicholas D. Youngblut et al. Nature Communications
- Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
- (2019) Tom O Delmont et al. eLife
- Prevalence of piscine orthoreovirus and salmonid alphavirus in sea-caught returning adult Atlantic salmon (Salmo salar L.) in northern Norway
- (2018) A S Madhun et al. JOURNAL OF FISH DISEASES
- Applied Hologenomics: Feasibility and Potential in Aquaculture
- (2018) Morten T. Limborg et al. TRENDS IN BIOTECHNOLOGY
- Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
- (2018) Tom O. Delmont et al. PeerJ
- Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs
- (2018) Maelle Sevellec et al. Microbiome
- Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
- (2018) Katharina Fietz et al. Microbiome
- Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
- (2018) M. Lisandra Zepeda Mendoza et al. Nature Ecology & Evolution
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- Analysis of the gut and gill microbiome of resistant and susceptible lines of rainbow trout (Oncorhynchus mykiss)
- (2018) Ryan M. Brown et al. FISH & SHELLFISH IMMUNOLOGY
- Lower levels of Persistent Organic Pollutants, metals and the marine omega 3-fatty acid DHA in farmed compared to wild Atlantic salmon ( Salmo salar )
- (2017) Anne-Katrine Lundebye et al. ENVIRONMENTAL RESEARCH
- Comprehensive microsatellite baseline for genetic stock identification of Atlantic salmon (Salmo salar L.) in northernmost Europe
- (2017) Mikhail Ozerov et al. ICES JOURNAL OF MARINE SCIENCE
- The environmental and host-associated bacterial microbiota of Arctic seawater-farmed Atlantic salmon with ulcerative disorders
- (2017) C Karlsen et al. JOURNAL OF FISH DISEASES
- Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
- (2017) Mathieu Groussin et al. Nature Communications
- MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads
- (2017) Thomas Nordahl Petersen et al. PLoS One
- Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
- (2016) Leighton Pritchard et al. Analytical Methods
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?
- (2016) Antton Alberdi et al. TRENDS IN ECOLOGY & EVOLUTION
- Fast and sensitive taxonomic classification for metagenomics with Kaiju
- (2016) Peter Menzel et al. Nature Communications
- boral - Bayesian Ordination and Regression Analysis of Multivariate Abundance Data in r
- (2016) Francis K.C. Hui Methods in Ecology and Evolution
- The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos
- (2016) Felix Sommer et al. Cell Reports
- A reference gene catalogue of the pig gut microbiome
- (2016) Liang Xiao et al. Nature Microbiology
- Widespread episodic thiamine deficiency in Northern Hemisphere wildlife
- (2016) Lennart Balk et al. Scientific Reports
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota
- (2015) Chris CR Smith et al. ISME Journal
- The biogeography of the atlantic salmon (Salmo salar) gut microbiome
- (2015) Martin S Llewellyn et al. ISME Journal
- Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
- (2015) Seth R. Bordenstein et al. PLOS BIOLOGY
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- ITEP: An integrated toolkit for exploration of microbial pan-genomes
- (2014) Matthew N Benedict et al. BMC GENOMICS
- Gut microbes of mammalian herbivores facilitate intake of plant toxins
- (2014) Kevin D. Kohl et al. ECOLOGY LETTERS
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data
- (2013) Matteo Fumagalli et al. GENETICS
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- The thiamine deficiency syndrome M74, a reproductive disorder of Atlantic salmon (Salmo salar) feeding in the Baltic Sea, is related to the fat and thiamine content of prey fish
- (2012) M. Keinanen et al. ICES JOURNAL OF MARINE SCIENCE
- THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES
- (2011) Robert M. Brucker et al. EVOLUTION
- ggplot2: Elegant Graphics for Data Analysis
- (2011) Cedric Ginestet JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
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