标题
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
作者
关键词
-
出版物
PeerJ
Volume 6, Issue -, Pages e4320
出版商
PeerJ
发表日期
2018-01-25
DOI
10.7717/peerj.4320
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
- (2017) Rika E. Anderson et al. Nature Communications
- Glucose Uptake in Prochlorococcus: Diversity of Kinetics and Effects on the Metabolism
- (2017) María del Carmen Muñoz-Marín et al. Frontiers in Microbiology
- Metagenomics as a preliminary screen for antimicrobial bioprospecting
- (2016) Soha Al-Amoudi et al. GENE
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- (2016) Stephen Nayfach et al. GENOME RESEARCH
- Global biogeography of Prochlorococcus genome diversity in the surface ocean
- (2016) Alyssa G Kent et al. ISME Journal
- Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific
- (2016) Alyse A Larkin et al. ISME Journal
- Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
- (2016) Matthew L Bendall et al. ISME Journal
- Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium
- (2016) Stephanie S Porter et al. ISME Journal
- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- Patient-Specific Bacteroides Genome Variants in Pouchitis
- (2016) Joseph H. Vineis et al. mBio
- A catalogue of 136 microbial draft genomes from Red Sea metagenomes
- (2016) Mohamed F. Haroon et al. Scientific Data
- Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community
- (2016) Stephan Thies et al. Scientific Reports
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Tara Oceans studies plankton at planetary scale
- (2015) P. Bork et al. SCIENCE
- Functional Basis of Microorganism Classification
- (2015) Chengsheng Zhu et al. PLoS Computational Biology
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- ITEP: An integrated toolkit for exploration of microbial pan-genomes
- (2014) Matthew N Benedict et al. BMC GENOMICS
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- PhyloSift: phylogenetic analysis of genomes and metagenomes
- (2014) Aaron E. Darling et al. PeerJ
- Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
- (2014) Steven J. Biller et al. Scientific Data
- Ecology of marine Bacteroidetes: a comparative genomics approach
- (2013) Beatriz Fernández-Gómez et al. ISME Journal
- A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
- (2013) A. Murat Eren et al. PLoS One
- Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean
- (2013) M. d. C. Munoz-Marin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Patterns and architecture of genomic islands in marine bacteria
- (2012) Beatriz Fernández-Gómez et al. BMC GENOMICS
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
- (2011) Vinod Kumar et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean
- (2011) Pia H Moisander et al. ISME Journal
- ggplot2: Elegant Graphics for Data Analysis
- (2011) Cedric Ginestet JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
- (2010) Rex R Malmstrom et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Ecosystem-specific selection pressures revealed through comparative population genomics
- (2010) M. L. Coleman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of Prochlorococcus clades from iron-depleted oceanic regions
- (2010) D. B. Rusch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Biogeography of the Sulfolobus islandicus pan-genome
- (2009) M. L. Reno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Glucose Uptake and Its Effect on Gene Expression in Prochlorococcus
- (2008) Guadalupe Gómez-Baena et al. PLoS One
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