Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
出版年份 2019 全文链接
标题
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
作者
关键词
-
出版物
Nature Communications
Volume 10, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-05-16
DOI
10.1038/s41467-019-10191-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The gut microbiome of nonhuman primates: Lessons in ecology and evolution
- (2018) Jonathan B. Clayton et al. AMERICAN JOURNAL OF PRIMATOLOGY
- Rates of gut microbiome divergence in mammals
- (2018) Alex H. Nishida et al. MOLECULAR ECOLOGY
- Culturing the human microbiota and culturomics
- (2018) Jean-Christophe Lagier et al. NATURE REVIEWS MICROBIOLOGY
- Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia
- (2018) Ashley A. Ross et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gut microbiomes of wild great apes fluctuate seasonally in response to diet
- (2018) Allison L. Hicks et al. Nature Communications
- sensiPhy : An r -package for sensitivity analysis in phylogenetic comparative methods
- (2018) Gustavo B. Paterno et al. Methods in Ecology and Evolution
- Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
- (2018) Pål Trosvik et al. Microbiome
- Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
- (2018) Nicholas A. Bokulich et al. Microbiome
- The hologenome concept of evolution after 10 years
- (2018) Eugene Rosenberg et al. Microbiome
- Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota
- (2018) Christopher A. Gaulke et al. mBio
- The Effects of Captivity on the Mammalian Gut Microbiome
- (2017) Valerie J. McKenzie et al. INTEGRATIVE AND COMPARATIVE BIOLOGY
- Links between Natural Variation in the Microbiome and Host Fitness in Wild Mammals
- (2017) Taichi A. Suzuki INTEGRATIVE AND COMPARATIVE BIOLOGY
- Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies
- (2017) Emily L Pascoe et al. ISME Journal
- Intestinal Microbiota of White Shrimp Penaeus vannamei Under Intensive Cultivation Conditions in Ecuador
- (2017) Oreste Gainza et al. MICROBIAL ECOLOGY
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Dispersal limitation promotes the diversification of the mammalian gut microbiota
- (2017) Andrew H. Moeller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed
- (2017) Goor Sasson et al. mBio
- Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
- (2017) Mathieu Groussin et al. Nature Communications
- Evolutionary Biology Needs Wild Microbiomes
- (2017) Sarah M. Hird Frontiers in Microbiology
- Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown
- (2016) Timothy J. Colston et al. MOLECULAR ECOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Captivity humanizes the primate microbiome
- (2016) Jonathan B. Clayton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cospeciation of gut microbiota with hominids
- (2016) A. H. Moeller et al. SCIENCE
- phylosignal: an R package to measure, test, and explore the phylogenetic signal
- (2016) François Keck et al. Ecology and Evolution
- Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History
- (2016) Andrew W. Brooks et al. PLOS BIOLOGY
- Gut Bifidobacteria Populations in Human Health and Aging
- (2016) Silvia Arboleya et al. Frontiers in Microbiology
- Influence of Endogenous and Exogenous Estrogenic Endocrine on Intestinal Microbiota in Zebrafish
- (2016) Yukun Liu et al. PLoS One
- Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
- (2015) Rachel N. Carmody et al. Cell Host & Microbe
- Marked seasonal variation in the wild mouse gut microbiota
- (2015) Corinne F Maurice et al. ISME Journal
- Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
- (2015) Gemma Henderson et al. Scientific Reports
- The Hologenome Concept: Helpful or Hollow?
- (2015) Nancy A. Moran et al. PLOS BIOLOGY
- Assessing the global phylum level diversity within the bacterial domain: A review
- (2015) Noha H. Youssef et al. Journal of Advanced Research
- The Earth Microbiome project: successes and aspirations
- (2014) Jack A Gilbert et al. BMC BIOLOGY
- Human Genetics Shape the Gut Microbiome
- (2014) Julia K. Goodrich et al. CELL
- Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge
- (2014) Renee M. Petri et al. PLoS One
- Seasonal Variation in Human Gut Microbiome Composition
- (2014) Emily R. Davenport et al. PLoS One
- A holobiont birth narrative: the epigenetic transmission of the human microbiome
- (2014) Scott F. Gilbert Frontiers in Genetics
- The Epidemiology and Evolution of Symbionts with Mixed-Mode Transmission
- (2013) Dieter Ebert Annual Review of Ecology Evolution and Systematics
- Performance Characteristics of qPCR Assays Targeting Human- and Ruminant-AssociatedBacteroidetesfor Microbial Source Tracking across Sixteen Countries on Six Continents
- (2013) Georg H. Reischer et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Responses of soil bacterial and fungal communities to extreme desiccation and rewetting
- (2013) Romain L Barnard et al. ISME Journal
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Convergence of gut microbiomes in myrmecophagous mammals
- (2013) Frédéric Delsuc et al. MOLECULAR ECOLOGY
- Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
- (2013) Jon G. Sanders et al. MOLECULAR ECOLOGY
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Animals in a bacterial world, a new imperative for the life sciences
- (2013) Margaret McFall-Ngai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The alligator gut microbiome and implications for archosaur symbioses
- (2013) Sarah W. Keenan et al. Scientific Reports
- Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
- (2012) KAREN E. SULLAM et al. MOLECULAR ECOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park
- (2012) P. H. Degnan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups
- (2012) S. A. Placella et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The equine intestinal microbiome
- (2012) Marcio C. Costa et al. ANIMAL HEALTH RESEARCH REVIEWS
- Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice
- (2011) J. J. Faith et al. SCIENCE
- Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
- (2011) B. D. Muegge et al. SCIENCE
- Evolutionary adaptations of ruminants and their potential relevance for modern production systems
- (2010) M. Clauss et al. Animal
- Role of gastrointestinal microbiota in fish
- (2010) Sukanta K Nayak AQUACULTURE RESEARCH
- Picante: R tools for integrating phylogenies and ecology
- (2010) S. W. Kembel et al. BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities
- (2010) Howard Ochman et al. PLOS BIOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Evidence for a tradeoff between retention time and chewing efficiency in large mammalian herbivores
- (2009) Marcus Clauss et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY
- PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals
- (2009) Kate E. Jones et al. ECOLOGY
- Evolution of Mammals and Their Gut Microbes
- (2008) R. E. Ley et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search