标题
The structural variation landscape in 492 Atlantic salmon genomes
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-14
DOI
10.1038/s41467-020-18972-x
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Domestication leads to increased predation susceptibility
- (2020) Monica F. Solberg et al. Scientific Reports
- Comparative transcriptomics reveals domestication‐associated features of Atlantic salmon lipid metabolism
- (2020) Yang Jin et al. MOLECULAR ECOLOGY
- Harnessing genomics to fast-track genetic improvement in aquaculture
- (2020) Ross D. Houston et al. NATURE REVIEWS GENETICS
- A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation
- (2020) Claire Mérot et al. TRENDS IN ECOLOGY & EVOLUTION
- Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
- (2020) Wai Yee Low et al. Nature Communications
- Going beyond SNPs: the role of structural genomic variants in adaptive evolution and species diversification
- (2019) Maren Wellenreuther et al. MOLECULAR ECOLOGY
- Population genetic analysis reveals a geographically limited transition zone between two genetically distinct Atlantic salmon lineages in Norway
- (2019) Vidar Wennevik et al. Ecology and Evolution
- Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
- (2019) Daniel L. Cameron et al. Nature Communications
- On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements
- (2019) Yann Bourgeois et al. Genes
- Structural variation in the sequencing era
- (2019) Steve S. Ho et al. NATURE REVIEWS GENETICS
- DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species
- (2019) M. Laporte et al. Science Advances
- Sex-dependent dominance maintains migration supergene in rainbow trout
- (2019) Devon E. Pearse et al. Nature Ecology & Evolution
- Glutamate receptors in domestication and modern human evolution
- (2019) Thomas O’Rourke et al. NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS
- The demographic history of Atlantic salmon (Salmo salar ) across its distribution range reconstructed from approximate Bayesian computations*
- (2018) Quentin Rougemont et al. EVOLUTION
- Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals
- (2018) James J. Lee et al. NATURE GENETICS
- Judging a salmon by its spots: environmental variation is the primary determinant of spot patterns in Salmo salar
- (2018) Katarina M. Jørgensen et al. BMC ECOLOGY
- SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
- (2018) Jonathan R Belyeu et al. GigaScience
- Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L) populations with different geographical origins
- (2018) M. E López et al. Evolutionary Applications
- CD22: A Regulator of Innate and Adaptive B Cell Responses and Autoimmunity
- (2018) Edward A. Clark et al. Frontiers in Immunology
- Atlantic salmon (Salmo salar L.) genetics in the 21st century: taking leaps forward in aquaculture and biological understanding
- (2018) R. D. Houston et al. ANIMAL GENETICS
- Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon
- (2018) Kyle Wellband et al. MOLECULAR ECOLOGY
- The impact of structural variation on human gene expression
- (2017) Colby Chiang et al. NATURE GENETICS
- An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
- (2017) M Ryan Corces et al. NATURE METHODS
- Self-domestication in Homo sapiens: Insights from comparative genomics
- (2017) Constantina Theofanopoulou et al. PLoS One
- Evolution of complexity in the zebrafish synapse proteome
- (2017) Àlex Bayés et al. Nature Communications
- Indexcov: fast coverage quality control for whole-genome sequencing
- (2017) Brent S Pedersen et al. GigaScience
- The Atlantic salmon genome provides insights into rediploidization
- (2016) Sigbjørn Lien et al. NATURE
- W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
- (2016) Jana Trifinopoulos et al. NUCLEIC ACIDS RESEARCH
- Comparative Analysis of the Shared Sex-Determination Region (SDR) among Salmonid Fishes
- (2015) Joshua J. Faber-Hammond et al. Genome Biology and Evolution
- SpeedSeq: ultra-fast personal genome analysis and interpretation
- (2015) Colby Chiang et al. NATURE METHODS
- The origins of mutational robustness
- (2015) Mario A. Fares TRENDS IN GENETICS
- Wham: Identifying Structural Variants of Biological Consequence
- (2015) Zev N. Kronenberg et al. PLoS Computational Biology
- Generation and Characterisation of Mice Deficient in the Multi-GTPase Domain Containing Protein, GIMAP8
- (2014) Louise M. C. Webb et al. PLoS One
- Transposable element islands facilitate adaptation to novel environments in an invasive species
- (2014) Lukas Schrader et al. Nature Communications
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- Behavior Genetics and the Domestication of Animals
- (2014) Per Jensen Annual Review of Animal Biosciences
- LUMPY: a probabilistic framework for structural variant discovery
- (2014) Ryan M Layer et al. GENOME BIOLOGY
- Deletion of α-neurexin II results in autism-related behaviors in mice
- (2014) J Dachtler et al. Translational Psychiatry
- The challenges and importance of structural variation detection in livestock
- (2014) Derek M. Bickhart et al. Frontiers in Genetics
- Estimating Individual Admixture Proportions from Next Generation Sequencing Data
- (2013) Line Skotte et al. GENETICS
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Progress in the Genetics of Polygenic Brain Disorders: Significant New Challenges for Neurobiology
- (2013) Steven A. McCarroll et al. NEURON
- Evolution of Synapse Complexity and Diversity
- (2012) Richard D. Emes et al. Annual Review of Neuroscience
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Rev-erb and Rev-erb coordinately protect the circadian clock and normal metabolic function
- (2012) A. Bugge et al. GENES & DEVELOPMENT
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Repetitive DNA and next-generation sequencing: computational challenges and solutions
- (2011) Todd J. Treangen et al. NATURE REVIEWS GENETICS
- Genome structural variation discovery and genotyping
- (2011) Can Alkan et al. NATURE REVIEWS GENETICS
- i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
- (2011) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
- (2009) Shaun M. Purcell et al. NATURE
- Human genetic variation and its contribution to complex traits
- (2009) Kelly A. Frazer et al. NATURE REVIEWS GENETICS
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
- Melanosomes at a glance
- (2008) C. Wasmeier et al. JOURNAL OF CELL SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started