BSA-Seq Approach Identified Candidate Region and Diagnostic Marker for Chilling Tolerance of High Oleic Acid Peanut at Germination Stage

Comparative physiological and transcriptomic analyses reveal key regulatory networks and potential hub genes controlling peanut chilling tolerance

(2022) He Zhang et al.   GENOMICS

Mechanistic Insights Into Trehalose-Mediated Cold Stress Tolerance in Rapeseed (Brassica napus L.) Seedlings

(2022) Ali Raza et al.   Frontiers in Plant Science

Small RNA and Degradome Deep Sequencing Reveals the Roles of microRNAs in Peanut (Arachis hypogaea L.) Cold Response

(2022) Xin Zhang et al.   Frontiers in Plant Science

Integrated Transcriptomic and Metabolomic Analyses of Cold-Tolerant and Cold-Sensitive Pepper Species Reveal Key Genes and Essential Metabolic Pathways Involved in Response to Cold Stress

(2022) Chonglun Gao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Negative effects of heat stress on maize yield were compensated by increasing thermal time and declining cold stress in northeast China

(2022) Yi Zhang et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Genome-Wide Characterization of Ascorbate Peroxidase Gene Family in Peanut (Arachis hypogea L.) Revealed Their Crucial Role in Growth and Multiple Stress Tolerance

(2022) Ali Raza et al.   Frontiers in Plant Science

Identification of Candidate Genes Conferring Cold Tolerance to Rice (Oryza sativa L.) at the Bud-Bursting Stage Using Bulk Segregant Analysis Sequencing and Linkage Mapping

(2021) Luomiao Yang et al.   Frontiers in Plant Science

Bulk segregation analysis in the NGS era: a review of its teenage years

(2021) Zhiqiang Li et al.   PLANT JOURNAL

Integrated Transcriptomics and Metabolomics Analysis Reveal Key Metabolism Pathways Contributing to Cold Tolerance in Peanut

(2021) Xin Wang et al.   Frontiers in Plant Science

Physiological and Molecular Mechanisms of ABA and CaCl2 Regulating Chilling Tolerance of Cucumber Seedlings

(2021) Qian Feng et al.   Plants-Basel

Molecular Regulation of Plant Responses to Environmental Temperatures

(2020) Yanglin Ding et al.   Molecular Plant

Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6

(2020) Huaiyong Luo et al.   THEORETICAL AND APPLIED GENETICS

Comparative Transcriptome-Based Mining and Expression Profiling of Transcription Factors Related to Cold Tolerance in Peanut

(2020) Chunji Jiang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice

(2020) Yinghua Pan et al.   BMC PLANT BIOLOGY

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

(2019) Weijian Zhuang et al.   NATURE GENETICS

Whole‐genome resequencing‐based QTL ‐seq identified AhTc1 gene encoding a R2R3‐ MYB transcription factor controlling peanut purple testa color

(2019) Yuhan Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

Spatiotemporal variation in vegetation spring phenology and its response to climate change in freshwater marshes of Northeast China

(2019) Xiangjin Shen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Whole genome re‐sequencing‐based QTL‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut

(2019) Rakesh Kumar et al.   PLANT BIOTECHNOLOGY JOURNAL

Research Progress in Membrane Lipid Metabolism and Molecular Mechanism in Peanut Cold Tolerance

(2019) He Zhang et al.   Frontiers in Plant Science

Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits

(2019) Sandip K. Bera et al.   PLoS One

OUP accepted manuscript

(2018)   BIOINFORMATICS

Identification of the Candidate Proteins Related to Oleic Acid Accumulation during Peanut (Arachis hypogaea L.) Seed Development through Comparative Proteome Analysis

(2018) Hao Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy

(2018) Rajeev K Varshney et al.   JOURNAL OF EXPERIMENTAL BOTANY

Early Cold-Induced Peroxidases and Aquaporins Are Associated With High Cold Tolerance in Dajiao (Musa spp. ‘Dajiao’)

(2018) Wei-Di He et al.   Frontiers in Plant Science

Complete resistance to powdery mildew and partial resistance to downy mildew in a Cucumis hystrix introgression line of cucumber were controlled by a co-localized locus

(2018) Kaijing Zhang et al.   THEORETICAL AND APPLIED GENETICS

Genetic Diversity, Population Structure, and Botanical Variety of 320 Global Peanut Accessions Revealed Through Tunable Genotyping-by-Sequencing

(2018) Zheng Zheng et al.   Scientific Reports

Discovery of genomic regions and candidate genes controlling shelling percentage using QTL ‐seq approach in cultivated peanut ( Arachis hypogaea L.)

(2018) Huaiyong Luo et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization and comparative expression analysis of CUL1 genes in rice

(2017) Sang-Hoon Kim et al.   Genes & Genomics

Natural variation reveals that OsSAP16 controls low-temperature germination in rice

(2017) Xiang Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Soybean NIMA-Related Kinase1 Promotes Plant Growth and Improves Salt and Cold Tolerance

(2017) Wen-Jia Pan et al.   PLANT AND CELL PHYSIOLOGY

Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene, RpsHC18, in soybean

(2017) Chao Zhong et al.   THEORETICAL AND APPLIED GENETICS

Development and validation of KASP assays for genes underpinning key economic traits in bread wheat

(2016) Awais Rasheed et al.   THEORETICAL AND APPLIED GENETICS

Insights into the Indian Peanut Genotypes for ahFAD2 Gene Polymorphism Regulating Its Oleic and Linoleic Acid Fluxes

(2016) Bhagwat Nawade et al.   Frontiers in Plant Science

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Characterization of high-oleic peanut natural mutants derived from an intersectional cross

(2015) C. T. Wang et al.   GRASAS Y ACEITES

VaCPK20 , a calcium-dependent protein kinase gene of wild grapevine Vitis amurensis Rupr., mediates cold and drought stress tolerance

(2015) Alexandra S. Dubrovina et al.   JOURNAL OF PLANT PHYSIOLOGY

Disruption of the Arabidopsis Defense Regulator Genes SAG101 , EDS1 , and PAD4 Confers Enhanced Freezing Tolerance

(2015) Qin-Fang Chen et al.   Molecular Plant

Next-generation sequencing for identification of candidate genes forFusariumwilt and sterility mosaic disease in pigeonpea (Cajanus cajan)

(2015) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

Genotypic effect of ahFAD2 on fatty acid profiles in six segregating peanut (Arachis hypogaea L) populations

(2013) Noelle A Barkley et al.   BMC GENETICS

MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

(2013) J. T. Hill et al.   GENOME RESEARCH

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Caenorhabditis elegans transthyretin-like protein TTR-52 mediates recognition of apoptotic cells by the CED-1 phagocyte receptor

(2010) Xiaochen Wang et al.   NATURE CELL BIOLOGY

A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice

(2010) C. F. Su et al.   PLANT PHYSIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Phenotypic diversity in cold-tolerant peanut (Arachis hypogaea L.) germplasm

(2008) H. D. Upadhyaya et al.   EUPHYTICA

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology