标题
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
作者
关键词
-
出版物
NATURE GENETICS
Volume 51, Issue 5, Pages 877-884
出版商
Springer Science and Business Media LLC
发表日期
2019-05-02
DOI
10.1038/s41588-019-0405-z
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination
- (2018) Soraya C. M. Leal-Bertioli et al. AMERICAN JOURNAL OF BOTANY
- High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut
- (2018) Gaurav Agarwal et al. PLANT BIOTECHNOLOGY JOURNAL
- Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
- (2018) Bhavna Hurgobin et al. PLANT BIOTECHNOLOGY JOURNAL
- A Mechanism for Genome Size Reduction Following Genomic Rearrangements
- (2018) Longhui Ren et al. Frontiers in Genetics
- Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut
- (2017) Josh Clevenger et al. Molecular Plant
- MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
- (2017) Chuan-Le Xiao et al. NATURE METHODS
- De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
- (2017) Olga Dudchenko et al. SCIENCE
- Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants
- (2017) Sophie Lanciano et al. PLoS Genetics
- Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut
- (2017) Manish K. Pandey et al. Scientific Reports
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
- (2016) David John Bertioli et al. NATURE GENETICS
- Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens
- (2016) Xiaoping Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence of Genomic Exchanges between Homeologous Chromosomes in a Cross of Peanut with Newly Synthetized Allotetraploid Hybrids
- (2016) Joel R. Nguepjop et al. Frontiers in Plant Science
- A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea
- (2016) Josh Clevenger et al. Frontiers in Plant Science
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- The wondrous cycles of polyploidy in plants
- (2015) Jonathan F. Wendel AMERICAN JOURNAL OF BOTANY
- Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis
- (2015) Soraya Leal-Bertioli et al. GENETICS
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
- (2015) Mark A Urich et al. Nature Protocols
- Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis
- (2015) Soraya Leal-Bertioli et al. GENETICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Genome sizes in diploid and allopolyploid Arachis L. species (section Arachis)
- (2014) Sergio Sebastián Samoluk et al. GENETIC RESOURCES AND CROP EVOLUTION
- Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
- (2014) B. Chalhoub et al. SCIENCE
- The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome
- (2013) David J. Bertioli et al. ANNALS OF BOTANY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers
- (2012) Márcio C. Moretzsohn et al. ANNALS OF BOTANY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut
- (2012) Ervin D Nagy et al. BMC GENOMICS
- The effect of tetraploidization of wild Arachis on leaf morphology and other drought-related traits
- (2012) Soraya C.M. Leal-Bertioli et al. ENVIRONMENTAL AND EXPERIMENTAL BOTANY
- MapDisto: fast and efficient computation of genetic linkage maps
- (2012) Mathias Lorieux MOLECULAR BREEDING
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Genetic and geographic origin of domesticated peanut as evidenced by 5S rDNA and chloroplast DNA sequences
- (2012) Marina Grabiele et al. PLANT SYSTEMATICS AND EVOLUTION
- Characterization of active miniature inverted-repeat transposable elements in the peanut genome
- (2012) Kenta Shirasawa et al. THEORETICAL AND APPLIED GENETICS
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A–B genome divergence
- (2011) Stephan Nielen et al. MOLECULAR GENETICS AND GENOMICS
- An overview of peanut and its wild relatives
- (2011) David J. Bertioli et al. Plant Genetic Resources-Characterization and Utilization
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Species relationships among the wild B genome of Arachis species (section Arachis) based on FISH mapping of rDNA loci and heterochromatin detection: a new proposal for genome arrangement
- (2010) Germán Robledo et al. THEORETICAL AND APPLIED GENETICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome
- (2009) Márcio C Moretzsohn et al. BMC PLANT BIOLOGY
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Homoeologous recombination in allopolyploids: the polyploid ratchet
- (2009) Robert T. Gaeta et al. NEW PHYTOLOGIST
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
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