Comparative chloroplast genome analyses of 23 species in Swertia L. (Gentianaceae) with implications for its phylogeny

Complete Mitochondrial DNA Genome of Nine Species of Sharks and Rays and Their Phylogenetic Placement among Modern Elasmobranchs

(2021) Vasiliki Kousteni et al.   Genes

Characterization and Comparative Analysis of Complete Chloroplast Genomes of Three Species From the Genus Astragalus (Leguminosae)

(2021) Chunyu Tian et al.   Frontiers in Genetics

Molecular evolution of chloroplast genomes in Monsteroideae (Araceae)

(2020) Claudia L. Henriquez et al.   PLANTA

Correlations among oligonucleotide repeats, nucleotide substitutions, and insertion-deletion mutations in chloroplast genomes of plant family Malvaceae

(2020) Abdullah et al.   Journal of Systematics and Evolution

Comparison of Chloroplast Genomes among Species of Unisexual and Bisexual Clades of the Monocot Family Araceae

(2020) Abdullah et al.   Plants-Basel

Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny

(2020) Qing Liu et al.   BMC PLANT BIOLOGY

Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony

(2020) Lili Guo et al.   INDUSTRIAL CROPS AND PRODUCTS

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

(2019) Xiao-Jian Qu et al.   Plant Methods

IRscope: an online program to visualize the junction sites of chloroplast genomes

(2018) Ali Amiryousefi et al.   BIOINFORMATICS

Complete Chloroplast Genome Sequence and Phylogenetic Analysis of the Medicinal Plant Artemisia annua

(2017) Xiaofeng Shen et al.   MOLECULES

Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

(2017) Sajjad Asaf et al.   Scientific Reports

Chloroplast genome structures in Gentiana (Gentianaceae), based on three medicinal alpine plants used in Tibetan herbal medicine

(2016) Lianghong Ni et al.   CURRENT GENETICS

Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

(2016) Yanci Yang et al.   Frontiers in Plant Science

Comparative Transcriptome and Chloroplast Genome Analyses of Two Related Dipteronia Species

(2016) Tao Zhou et al.   Frontiers in Plant Science

Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

(2015) Freek T. Bakker et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The complete chloroplast genome sequence of Aster spathulifolius (Asteraceae); genomic features and relationship with Asteraceae

(2015) Kyoung Su Choi et al.   GENE

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

Chloroplasts extend stromules independently and in response to internal redox signals

(2015) Jacob O. Brunkard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales

(2013) Wenpan Dong et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa

(2013) Ibrar Ahmed et al.   Molecular Ecology Resources

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

What controlled Mid–Late Miocene long-term aridification in Central Asia? — Global cooling or Tibetan Plateau uplift: A review

(2012) Yunfa Miao et al.   EARTH-SCIENCE REVIEWS

Mutational Dynamics of Aroid Chloroplast Genomes

(2012) Ibrar Ahmed et al.   Genome Biology and Evolution

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies

(2011) L. Doorduin et al.   DNA RESEARCH

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

(2011) Dai-Yong Kuang et al.   GENOME

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species

(2009) DANIEL EBERT et al.   Molecular Ecology Resources

Complete chloroplast DNA sequence from a Korean endemic genus, Megaleranthis saniculifolia, and its evolutionary implications

(2009) Young-Kyu Kim et al.   MOLECULES AND CELLS