Correlations among oligonucleotide repeats, nucleotide substitutions, and insertion-deletion mutations in chloroplast genomes of plant family Malvaceae

Evolutionary dynamics of chloroplast genomes in subfamily Aroideae (Araceae)

(2020) Claudia L. Henriquez et al.   GENOMICS

Molecular evolution of chloroplast genomes in Monsteroideae (Araceae)

(2020) Claudia L. Henriquez et al.   PLANTA

Chloroplast genome of Hibiscus rosa-sinensis (Malvaceae): Comparative analyses and identification of mutational hotspots

(2019) Abdullah et al.   GENOMICS

Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae

(2019) Wei Zhai et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae

(2019) Furrukh Mehmood et al.   GENOMICS

Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: Comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae

(2019) Iram Shahzadi et al.   GENOMICS

Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational Hotspots

(2019) Shabina Iram et al.   Plants-Basel

The complete chloroplast genome of Reevesia thyrsoidea (Malvaceae)

(2019) Guoming Quan et al.   Mitochondrial DNA Part B-Resources

GB2sequin - A file converter preparing custom GenBank files for database submission

(2018) Pascal Lehwark et al.   GENOMICS

The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae

(2018) Ali Amiryousefi et al.   PLoS One

Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences

(2018) Alison P. A. Menezes et al.   Scientific Reports

The Repeat Sequences and Elevated Substitution Rates of the Chloroplast accD Gene in Cupressophytes

(2018) Jia Li et al.   Frontiers in Plant Science

Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny

(2018) Ying Wu et al.   Frontiers in Plant Science

Complete chloroplast genome sequence of the red silk cotton tree (Bombax ceiba)

(2018) Yong Gao et al.   Mitochondrial DNA Part B-Resources

A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

(2018) Justin L. Conover et al.   Journal of Integrative Plant Biology

Authentication Markers for Five Major Panax Species Developed via Comparative Analysis of Complete Chloroplast Genome Sequences

(2017) Van Binh Nguyen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

The complete chloroplast genome of a rare species Heritiera parvifolia Merr. (Malvales: Sterculiaceae)

(2017) Gui-Liang Xin et al.   Conservation Genetics Resources

Correction to: Complete chloroplast genome of Firmiana major (Malvaceae), a critically endangered species endemic to southwest China

(2017) Ji‑Dong Ya et al.   Conservation Genetics Resources

Characterization of the complete chloroplast genome sequence of Firmiana pulcherrima (Malvaceae)

(2017) Jian-Hua Wang et al.   Conservation Genetics Resources

Plastome Sequencing of Ten Nonmodel Crop Species Uncovers a Large Insertion of Mitochondrial DNA in Cashew

(2017) Samar O. Rabah et al.   Plant Genome

The complete plastome sequence of Durian, Durio zibethinus L. (Malvaceae)

(2017) Se-Hwan Cheon et al.   Mitochondrial DNA Part B-Resources

The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication

(2015) Delene J. Oldenburg et al.   CURRENT GENETICS

Dynamics of chloroplast genomes in green plants

(2015) Jian-Hong Xu et al.   GENOMICS

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications

(2015) Jie Cai et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Phylogenomics of the plant family Araceae

(2014) Claudia L. Henriquez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms

(2013) Xuan Yi et al.   Genome Biology and Evolution

Identification of chloroplast genome loci suitable for high-resolution phylogeographic studies ofColocasia esculenta(L.) Schott (Araceae) and closely related taxa

(2013) Ibrar Ahmed et al.   Molecular Ecology Resources

Origins and Domestication of Cultivated Banana Inferred from Chloroplast and Nuclear Genes

(2013) Lin-Feng Li et al.   PLoS One

Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA

(2012) Nolan Kane et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Mutational Dynamics of Aroid Chloroplast Genomes

(2012) Ibrar Ahmed et al.   Genome Biology and Evolution

Global history of the ancient monocot family Araceae inferred with models accounting for past continental positions and previous ranges based on fossils

(2012) Lars Nauheimer et al.   NEW PHYTOLOGIST

The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids

(2012) Cheng-Fong Jheng et al.   PLANT SCIENCE

Analysis of Complete Nucleotide Sequences of 12 Gossypium Chloroplast Genomes: Origin and Evolution of Allotetraploids

(2012) Qin Xu et al.   PLoS One

Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

Systematic Error in Seed Plant Phylogenomics

(2011) Bojian Zhong et al.   Genome Biology and Evolution

Chloroplast-derived vaccines against human diseases: achievements, challenges and scopes

(2011) Andreas G. Lössl et al.   PLANT BIOTECHNOLOGY JOURNAL

Clusters of Nucleotide Substitutions and Insertion/Deletion Mutations Are Associated with Repeat Sequences

(2011) Michael J. McDonald et al.   PLOS BIOLOGY

High-quality plant DNA extraction for PCR: an easy approach

(2010) I. Ahmed et al.   JOURNAL OF APPLIED GENETICS

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intraspecific Inversions Pose a Challenge for the trnH-psbA Plant DNA Barcode

(2010) Barbara A. Whitlock et al.   PLoS One

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Variation in the Ratio of Nucleotide Substitution and Indel Rates across Genomes in Mammals and Bacteria

(2009) J.-Q. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomewide Association between Insertions/Deletions and the Nucleotide Diversity in Bacteria

(2009) L. Zhu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Evolutionary pattern of protein architecture in mammal and fruit fly genomes

(2008) Haiwang Yang et al.   GENOMICS

Difficulties in Testing for Covarion-Like Properties of Sequences under the Confounding Influence of Changing Proportions of Variable Sites

(2008) N. Gruenheit et al.   MOLECULAR BIOLOGY AND EVOLUTION

The pattern of insertion/deletion polymorphism in Arabidopsis thaliana

(2008) Wen Zhang et al.   MOLECULAR GENETICS AND GENOMICS

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes

(2008) Dacheng Tian et al.   NATURE

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Phylogeny and Biogeography of Tribe Hibisceae (Malvaceae) on Madagascar

(2008) Margaret M. Koopman et al.   SYSTEMATIC BOTANY