Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
出版年份 2015 全文链接
标题
Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
作者
关键词
-
出版物
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
Volume 117, Issue 1, Pages 33-43
出版商
Oxford University Press (OUP)
发表日期
2015-08-07
DOI
10.1111/bij.12642
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico
- (2015) Loubab Zedane et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data
- (2015) Xutao Deng et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition
- (2014) Guillaume Besnard et al. JOURNAL OF EXPERIMENTAL BOTANY
- Mining Herbaria for Plant Pathogen Genomes: Back to the Future
- (2014) Kentaro Yoshida et al. PLoS Pathogens
- ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
- (2013) Scott C. Clark et al. BIOINFORMATICS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke
- (2013) Dan G. Bock et al. NEW PHYTOLOGIST
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data
- (2013) Aarti Desai et al. PLoS One
- Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
- (2013) Martijn Staats et al. PLoS One
- DNA Analysis of Herbarium Specimens of the Grass Weed Alopecurus myosuroides Reveals Herbicide Resistance Pre-Dated Herbicides
- (2013) Christophe Délye et al. PLoS One
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
- (2012) Tiina Särkinen et al. PLoS One
- Reference-Free Comparative Genomics of 174 Chloroplasts
- (2012) Chai-Shian Kua et al. PLoS One
- Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
- (2011) Shannon C. K. Straub et al. AMERICAN JOURNAL OF BOTANY
- GAGE: A critical evaluation of genome assemblies and assembly algorithms
- (2011) S. L. Salzberg et al. GENOME RESEARCH
- DNA Damage in Plant Herbarium Tissue
- (2011) Martijn Staats et al. PLoS One
- Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia
- (2010) P. Sebastian et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Herbaria are a major frontier for species discovery
- (2010) D. P. Bebber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now