Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny
出版年份 2020 全文链接
标题
Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny
作者
关键词
-
出版物
BMC PLANT BIOLOGY
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-09-02
DOI
10.1186/s12870-020-02621-y
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evolutionary dynamics of chloroplast genomes in subfamily Aroideae (Araceae)
- (2020) Claudia L. Henriquez et al. GENOMICS
- Molecular evolution of chloroplast genomes in Monsteroideae (Araceae)
- (2020) Claudia L. Henriquez et al. PLANTA
- The large single-copy (LSC) region functions as a highly effective and efficient molecular marker for accurate authentication of medicinal Dendrobium species
- (2020) Ludan Li et al. Acta Pharmaceutica Sinica B
- Correlations among oligonucleotide repeats, nucleotide substitutions, and insertion-deletion mutations in chloroplast genomes of plant family Malvaceae
- (2020) Abdullah et al. Journal of Systematics and Evolution
- The Plastid Genome of Deschampsia cespitosa (Poaceae)
- (2019) Jorge Chiapella et al. MOLECULES
- Experimental evolutionary studies on the genetic autonomy of the cytoplasmic genome “plasmon” in the Triticum (wheat)–Aegilops complex
- (2019) Koichiro Tsunewaki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chloroplast genome of Hibiscus rosa-sinensis (Malvaceae): Comparative analyses and identification of mutational hotspots
- (2019) Abdullah et al. GENOMICS
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
- (2019) Stephan Greiner et al. NUCLEIC ACIDS RESEARCH
- The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads
- (2019) Qing Liu et al. BMC PLANT BIOLOGY
- Plastome reduction in the only parasitic gymnosperm Parasitaxus is due to losses of photosynthesis but not housekeeping genes and apparently involves the secondary gain of a large inverted repeat
- (2019) Xiao-Jian Qu et al. Genome Biology and Evolution
- Understanding evolution in Poales: Insights from Eriocaulaceae plastome
- (2019) Ashwini M. Darshetkar et al. PLoS One
- Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational Hotspots
- (2019) Shabina Iram et al. Plants-Basel
- Developing Chloroplast Genomic Resources from 25 Avena Species for the Characterization of Oat Wild Relative Germplasm
- (2019) Yong-Bi Fu et al. Plants-Basel
- IRscope: an online program to visualize the junction sites of chloroplast genomes
- (2018) Ali Amiryousefi et al. BIOINFORMATICS
- The complete chloroplast genome sequence of Pseudoroegneria libanotica, genomic features, and phylogenetic relationship with Triticeae species
- (2018) D. D. Wu et al. BIOLOGIA PLANTARUM
- Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
- (2018) Wan-Lin Dong et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Oat evolution revealed in the maternal lineages of 25 Avena species
- (2018) Yong-Bi Fu Scientific Reports
- DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
- (2017) Julio Rozas et al. MOLECULAR BIOLOGY AND EVOLUTION
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
- (2017) Ming-Cheng Luo et al. NATURE
- GeSeq – versatile and accurate annotation of organelle genomes
- (2017) Michael Tillich et al. NUCLEIC ACIDS RESEARCH
- A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications
- (2017) Robert J. Soreng et al. Journal of Systematics and Evolution
- Unraveling the evolutionary dynamics of ancient and recent polyploidization events in Avena (Poaceae)
- (2017) Qing Liu et al. Scientific Reports
- Genome size variation in the genus Avena
- (2016) Honghai Yan et al. GENOME
- Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia
- (2016) Anna V. Williams et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
- (2016) Jana Trifinopoulos et al. NUCLEIC ACIDS RESEARCH
- Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants
- (2016) Susann Wicke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
- (2015) Andan Zhu et al. NEW PHYTOLOGIST
- A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions
- (2015) Stephen R. Downie et al. SYSTEMATIC BOTANY
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
- (2013) Jun-Bo Yang et al. BMC EVOLUTIONARY BIOLOGY
- The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms
- (2013) Xuan Yi et al. Genome Biology and Evolution
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- The effects of a stimulating intron on the expression of heterologous genes inArabidopsis thaliana
- (2013) Shahram Emami et al. PLANT BIOTECHNOLOGY JOURNAL
- The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm
- (2013) Elena L. Peredo et al. PLoS One
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes
- (2012) Tea Huotari et al. GENE
- Complete cpDNA genome sequence of Smilax china and phylogenetic placement of Liliales – Influences of gene partitions and taxon sampling
- (2012) Juan Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Why eukaryotic cells use introns to enhance gene expression: Splicing reduces transcription-associated mutagenesis by inhibiting topoisomerase I cutting activity
- (2011) Deng-Ke Niu et al. Biology Direct
- Elimination of a group II intron from a plastid gene causes a mutant phenotype
- (2011) K. Petersen et al. NUCLEIC ACIDS RESEARCH
- The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
- (2011) Susann Wicke et al. PLANT MOLECULAR BIOLOGY
- Clusters of Nucleotide Substitutions and Insertion/Deletion Mutations Are Associated with Repeat Sequences
- (2011) Michael J. McDonald et al. PLOS BIOLOGY
- Interactive microbial genome visualization with GView
- (2010) Aaron Petkau et al. BIOINFORMATICS
- Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
- (2010) Christoph Mayer et al. BMC GENOMICS
- Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison
- (2010) Roberto Mariotti et al. BMC PLANT BIOLOGY
- progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
- (2010) Aaron E. Darling et al. PLoS One
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
- (2010) Dapeng Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
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