High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features

(2010) Leah M. Morris et al.   AMERICAN JOURNAL OF BOTANY

Migration of endpoints of two genes relative to boundaries between regions of the plastid genome in the grass family (Poaceae)

(2010) Jerrold I. Davis et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic relationships and natural hybridization among the North American woody bamboos (Poaceae: Bambusoideae: Arundinaria )

(2010) Jimmy K. Triplett et al.   AMERICAN JOURNAL OF BOTANY

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

(2010) Fu-Hui Wu et al.   BMC PLANT BIOLOGY

Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences

(2010) Zhenhua Peng et al.   BMC PLANT BIOLOGY

Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae

(2010) Mary M. Guisinger et al.   JOURNAL OF MOLECULAR EVOLUTION

Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence

(2010) Chun-Xia Zeng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny of the Temperate Bamboos (Poaceae: Bambusoideae: Bambuseae) with an Emphasis on Arundinaria and Allies

(2010) Jimmy K. Triplett et al.   SYSTEMATIC BOTANY

The complete chloroplast genome of tall fescue (Lolium arundinaceum ; Poaceae) and comparison of whole plastomes from the family Poaceae

(2009) A. Bruce Cahoon et al.   AMERICAN JOURNAL OF BOTANY

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Complete Chloroplast Genome Sequence of a Major Allogamous Forage Species, Perennial Ryegrass (Lolium perenne L.)

(2009) K. Diekmann et al.   DNA RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals

(2009) Charles H. Leseberg et al.   JOURNAL OF MOLECULAR EVOLUTION

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

(2009) Bojian Zhong et al.   PLoS One

Complete nucleotide sequence of Dendrocalamus latiflorus and Bambusa oldhamii chloroplast genomes

(2009) F.-H. Wu et al.   TREE PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Complete Sequence of the Duckweed (Lemna minor) Chloroplast Genome: Structural Organization and Phylogenetic Relationships to Other Angiosperms

(2008) Andrey V. Mardanov et al.   JOURNAL OF MOLECULAR EVOLUTION

Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

(2008) Sarawood Sungkaew et al.   JOURNAL OF PLANT RESEARCH

Large multi-gene phylogenetic trees of the grasses (Poaceae): Progress towards complete tribal and generic level sampling

(2008) Yanis Bouchenak-Khelladi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A molecular phylogenetic and fruit evolutionary analysis of the major groups of the paleotropical woody bamboos (Gramineae: Bambusoideae) based on nuclear ITS, GBSSI gene and plastid trnL-F DNA sequences

(2008) Han-Qi Yang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

(2008) Richard Cronn et al.   NUCLEIC ACIDS RESEARCH

An Optimized Chloroplast DNA Extraction Protocol for Grasses (Poaceae) Proves Suitable for Whole Plastid Genome Sequencing and SNP Detection

(2008) Kerstin Diekmann et al.   PLoS One

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE

Incorporating gaps as phylogenetic characters across eight DNA regions: Ramifications for North American Psoraleeae (Leguminosae)

(2007) Ashley N. Egan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION