In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus

Cytogenetic characterization and mapping of the repetitive DNAs in Cycloramphus bolitoglossus (Werner, 1897): More clues for the chromosome evolution in the genus Cycloramphus (Anura, Cycloramphidae)

(2021) Gislayne de Paula Bueno et al.   PLoS One

Evolution of genome structure in the Drosophila simulans species complex

(2021) Mahul Chakraborty et al.   GENOME RESEARCH

Population and subspecies diversity at mouse centromere satellites

(2021) Uma P. Arora et al.   BMC GENOMICS

The Role of Satellite DNAs in Genome Architecture and Sex Chromosome Evolution in Crambidae Moths

(2021) Diogo C. Cabral-de-Mello et al.   Frontiers in Genetics

Satellitome Analysis of Rhodnius prolixus, One of the Main Chagas Disease Vector Species

(2021) Eugenia E. Montiel et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Highly contiguous assemblies of 101 drosophilid genomes

(2021) Bernard Y Kim et al.   eLife

Comparative Analysis of Transposable Elements in Genus Calliptamus Grasshoppers Revealed That Satellite DNA Contributes to Genome Size Variation

(2021) Muhammad Majid et al.   Insects

An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres

(2021) Leonardo Adabo Cintra et al.   GENOME

Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis

(2020) Jullien M Flynn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis

(2020) Octavio M Palacios-Gimenez et al.   Genome Biology and Evolution

Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade

(2020) John S Sproul et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional Significance of Satellite DNAs: Insights From Drosophila

(2020) Aleksei S. Shatskikh et al.   Frontiers in Cell and Developmental Biology

Origins and Evolutionary Patterns of the 1.688 Satellite DNA Family in Drosophila Phylogeny

(2020) Leonardo G. de Lima et al.   G3-Genes Genomes Genetics

RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles

(2020) Sherif Negm et al.   Molecular Ecology Resources

Islands of retroelements are major components of Drosophila centromeres

(2019) Ching-Ho Chang et al.   PLOS BIOLOGY

Genome Size Evolution Differs Between Drosophila Subgenera with Striking Differences in Male and Female Genome Size in Sophophora

(2019) Carl E. Hjelmen et al.   G3-Genes Genomes Genetics

Patterns of Genomic Differentiation in the Drosophila nasuta Species Complex

(2019) Dat Mai et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification and characterization of abundant repetitive sequences in Allium cepa

(2019) Jiaping Fu et al.   Scientific Reports

Ancestral male recombination in Drosophila albomicans produced geographically restricted neo-Y chromosome haplotypes varying in age and onset of decay

(2019) Kevin H-C. Wei et al.   PLoS Genetics

De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines

(2019) Bráulio S. M. L. Silva et al.   PLoS One

High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats

(2018) Francisco J. Ruiz-Ruano et al.   CHROMOSOMA

Double insertion of transposable elements provides a substrate for the evolution of satellite DNA

(2018) Michael P. McGurk et al.   GENOME RESEARCH

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny

(2018) Kevin H -C Wei et al.   MOLECULAR BIOLOGY AND EVOLUTION

GC content elevates mutation and recombination rates in the yeastSaccharomyces cerevisiae

(2018) Denis A. Kiktev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spontaneous gain of susceptibility suggests a novel mechanism of resistance to hybrid dysgenesis in Drosophila virilis

(2018) Sergei Y. Funikov et al.   PLoS Genetics

De novo assembly of a young Drosophila Y chromosome using single-molecule sequencing and chromatin conformation capture

(2018) Shivani Mahajan et al.   PLOS BIOLOGY

Genomic changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura

(2017) Ching-Ho Chang et al.   EVOLUTION

Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster

(2017) Daniel E. Khost et al.   GENOME RESEARCH

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

(2017) Petr Novák et al.   NUCLEIC ACIDS RESEARCH

Dissecting the Satellite DNA Landscape in Three Cactophilic Drosophila Sequenced Genomes

(2017) Leonardo G. de Lima et al.   G3-Genes Genomes Genetics

Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element

(2017) Wilson Leung et al.   G3-Genes Genomes Genetics

Silencing of Transposable Elements by piRNAs in Drosophila : An Evolutionary Perspective

(2017) Shiqi Luo et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The mode and tempo of genome size evolution in the subgenus Sophophora

(2017) Carl E. Hjelmen et al.   PLoS One

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

(2016) Camille Sessegolo et al.   Biology Letters

Hawaiian Drosophila genomes: size variation and evolutionary expansions

(2016) Elysse M. Craddock et al.   GENETICA

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Analysis of Satellite DNA in the Drosophila melanogaster Species Complex

(2016) Madhav Jagannathan et al.   G3-Genes Genomes Genetics

High-throughput analysis of the satellitome illuminates satellite DNA evolution

(2016) Francisco J. Ruiz-Ruano et al.   Scientific Reports

Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression

(2015) Guilherme B. Dias et al.   CHROMOSOME RESEARCH

An Evolutionary Classification of Genomic Function

(2015) Dan Graur et al.   Genome Biology and Evolution

‘Satellite DNA transcripts have diverse biological roles in Drosophila’

(2015) G C S Kuhn   HEREDITY

Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

(2015) Laura J. Kelly et al.   NEW PHYTOLOGIST

The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs

(2015) Miguel Garavís et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Genomics of Ecological Adaptation in Cactophilic Drosophila

(2015) Yolanda Guillén et al.   Genome Biology and Evolution

The organization and evolution of the Responder satellite in species of the Drosophila melanogaster group: dynamic evolution of a target of meiotic drive

(2014) Amanda M Larracuente   BMC EVOLUTIONARY BIOLOGY

Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis

(2014) Guilherme B. Dias et al.   Genome Biology and Evolution

Repetitive centromeric satellite RNA is essential for kinetochore formation and cell division

(2014) Silvana Rošić et al.   JOURNAL OF CELL BIOLOGY

siRNAs from an X-linked satellite repeat promote X-chromosome recognition inDrosophila melanogaster

(2014) Debashish U. Menon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlated variation and population differentiation in satellite DNA abundance among lines ofDrosophila melanogaster

(2014) Kevin H.-C. Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Repeat Abundances Contain Phylogenetic Signal

(2014) S. Dodsworth et al.   SYSTEMATIC BIOLOGY

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Medium-sized tandem repeats represent an abundant component of the Drosophila virilis genome

(2013) Murat A Abdurashitov et al.   BMC GENOMICS

Phylogenetic analysis and a time tree for a large drosophilid data set (Diptera: Drosophilidae)

(2013) Claudia A. M. Russo et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

(2013) Daniël P Melters et al.   GENOME BIOLOGY

Incompatibility Between X Chromosome Factor and Pericentric Heterochromatic Region Causes Lethality in Hybrids Between Drosophila melanogaster and Its Sibling Species

(2012) M. V. Cattani et al.   GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Phylogenetic signal and linear regression on species data

(2010) Liam J. Revell   Methods in Ecology and Evolution

Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila

(2009) Patrick M. Ferree et al.   PLOS BIOLOGY

Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster

(2008) Gustavo C. S. Kuhn et al.   CHROMOSOME RESEARCH

Satellite DNA in insects: a review

(2008) T Palomeque et al.   HEREDITY

Genome size diversity in the family Drosophilidae

(2008) T R Gregory et al.   HEREDITY