RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles
出版年份 2020 全文链接
标题
RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles
作者
关键词
-
出版物
Molecular Ecology Resources
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-12-05
DOI
10.1111/1755-0998.13305
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade
- (2020) John S Sproul et al. MOLECULAR BIOLOGY AND EVOLUTION
- Repetitive DNA profiles Reveal Evidence of Rapid Genome Evolution and Reflect Species Boundaries in Ground Beetles
- (2020) John S Sproul et al. SYSTEMATIC BIOLOGY
- The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families
- (2020) Jason D. Fernandes et al. Mobile DNA
- Transposable elements drive rapid phenotypic variation in Capsella rubella
- (2019) Xiao-Min Niu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Devia TE : Assembly‐free analysis and visualization of mobile genetic element composition
- (2019) Lukas Weilguny et al. Molecular Ecology Resources
- The impact of transposable elements in adaptive evolution
- (2018) Lukas Schrader et al. MOLECULAR ECOLOGY
- Computational tools to unmask transposable elements
- (2018) Patricia Goerner-Potvin et al. NATURE REVIEWS GENETICS
- Phylogenetic signal of genomic repeat abundances can be distorted by random homoplasy: a case study from hominid primates
- (2018) María Martín-Peciña et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Genome Size in North American Fireflies: Substantial Variation Likely Driven by Neutral Processes
- (2017) Sarah Sander Lower et al. Genome Biology and Evolution
- TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
- (2017) Petr Novák et al. NUCLEIC ACIDS RESEARCH
- Cryptic species in the mountaintops: species delimitation and taxonomy of the Bembidion breve species group (Coleoptera: Carabidae) aided by genomic architecture of a century-old type specimen
- (2017) John S Sproul et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data
- (2017) Michael G. Nelson et al. G3-Genes Genomes Genetics
- SLiM 2: Flexible, Interactive Forward Genetic Simulations
- (2016) Benjamin C. Haller et al. MOLECULAR BIOLOGY AND EVOLUTION
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data
- (2016) Hannah M. Tetreault et al. G3-Genes Genomes Genetics
- Comparative Analysis of Satellite DNA in the Drosophila melanogaster Species Complex
- (2016) Madhav Jagannathan et al. G3-Genes Genomes Genetics
- Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
- (2016) Tim Stuart et al. eLife
- De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)
- (2015) Clément Goubert et al. Genome Biology and Evolution
- Transposable element detection from whole genome sequence data
- (2015) Adam D. Ewing Mobile DNA
- The organization and evolution of the Responder satellite in species of the Drosophila melanogaster group: dynamic evolution of a target of meiotic drive
- (2014) Amanda M Larracuente BMC EVOLUTIONARY BIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic Repeat Abundances Contain Phylogenetic Signal
- (2014) S. Dodsworth et al. SYSTEMATIC BIOLOGY
- RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
- (2013) P. Novak et al. BIOINFORMATICS
- Genome sequencing reveals complex speciation in the Drosophila simulans clade
- (2012) D. Garrigan et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila
- (2009) Patrick M. Ferree et al. PLOS BIOLOGY
- Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes
- (2008) O. Raskina et al. CYTOGENETIC AND GENOME RESEARCH
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