Functional Haplotypes and Evolutionary Insight into the Granule-Bound Starch Synthase II (GBSSII) Gene in Korean Rice Accessions (KRICE_CORE)

Genetic characterization and association mapping in near-isogenic lines of waxy maize using seed characteristics and SSR markers

(2021) Hae Ri Kim et al.   Genes & Genomics

Breeding of High Cooking and Eating Quality in Rice by Marker-Assisted Backcrossing (MABc) Using KASP Markers

(2021) Me-Sun Kim et al.   Plants-Basel

Whole-genome resequencing provides insights into the population structure and domestication signatures of ducks in eastern China

(2021) Peishi Feng et al.   BMC GENOMICS

Genotyping-by-sequencing based QTL mapping identified a novel waxy allele contributing to high amylose starch in wheat

(2021) Ankita Mishra et al.   EUPHYTICA

Haplotype Analysis of BADH1 by Next-Generation Sequencing Reveals Association with Salt Tolerance in Rice during Domestication

(2021) Myeong-Hyeon Min et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository

(2021) Yingdong Zhao et al.   Journal of Translational Medicine

Genome-Wide Identification and Genetic Variations of the Starch Synthase Gene Family in Rice

(2021) Hongjia Zhang et al.   Plants-Basel

Morphology and Physicochemical Properties of Starch from Waxy and Non‐Waxy Barley

(2020) Xinyu Chen et al.   STARCH-STARKE

Amylose in starch: towards an understanding of biosynthesis, structure and function

(2020) David Seung   NEW PHYTOLOGIST

The origin of Wx la provides new insights into the improvement of grain quality in rice

(2020) Hao Zhou et al.   Journal of Integrative Plant Biology

A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency

(2020) Changquan Zhang et al.   Journal of Integrative Plant Biology

Sequence polymorphism of the waxy gene in waxy maize accessions and characterization of a new waxy allele

(2020) Meijie Luo et al.   Scientific Reports

Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement

(2019) Kun Lu et al.   Nature Communications

Development of intron length polymorphic (ILP) markers in onion (Allium cepa L.), and their cross-species transferability in garlic (A. sativum L.) and wild relatives

(2019) Kuldip Jayaswall et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genetic diversity of Indo-China rice varieties using ISSR, SRAP and InDel markers

(2019) Pattaraborn Moonsap et al.   JOURNAL OF GENETICS

GBSS‐BINDING PROTEIN , encoding a CBM48 domain‐containing protein, affects rice quality and yield

(2019) Wei Wang et al.   Journal of Integrative Plant Biology

Starch accumulation in rice grains subjected to drought during grain filling stage

(2019) Prathap V et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Profiling SNP and Nucleotide Diversity to Characterize Mekong Delta Rice Landraces in Southeast Asian Populations

(2019) Nguyen Thanh Tam et al.   Plant Genome

A Rice Genetic Improvement Boom by Next Generation Sequencing

(2018) Xiangchun Zhou et al.   CURRENT ISSUES IN MOLECULAR BIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and population structure of red rice germplasm in Bangladesh

(2018) M. Z. Islam et al.   PLoS One

Local PCA Shows How the Effect of Population Structure Differs Along the Genome

(2018) Han Li et al.   GENETICS

Whole Genome Sequencing Reveals the Islands of Novel Polymorphisms in Two Native Aromatic Japonica Rice Landraces from Vietnam

(2017) Khuat Huu Trung et al.   Genome Biology and Evolution

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves

(2017) David Seung et al.   PLANT CELL

Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice

(2017) Nisha Singh et al.   Frontiers in Plant Science

Haplotype Analysis of the Pre-harvest Sprouting Resistance Locus Phs-A1 Reveals a Causal Role of TaMKK3-A in Global Germplasm

(2017) Oluwaseyi Shorinola et al.   Frontiers in Plant Science

Whole genome sequencing of Oryza sativa L. cv. Seeragasamba identifies a new fragrance allele in rice

(2017) Ganigara Bindusree et al.   PLoS One

Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era

(2016) Tae-Sung Kim et al.   BMC GENOMICS

Genetic diversity of the wx flanking region in rice landraces in northern Laos

(2016) Chiaki Muto et al.   BREEDING SCIENCE

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Nucleotide Diversity and Molecular Evolution of the ALK Gene in Cultivated Rice and its Wild Relatives

(2016) Ying Zhou et al.   PLANT MOLECULAR BIOLOGY REPORTER

Biological Implications in Cassava for the Production of Amylose-Free Starch: Impact on Root Yield and Related Traits

(2016) Amanda Karlström et al.   Frontiers in Plant Science

Nucleotide diversity analysis highlights functionally important genomic regions

(2016) Tatiana V. Tatarinova et al.   Scientific Reports

Involvement of α-Amylase Genes in Starch Degradation in Rice Leaf Sheaths at the Post-Heading Stage

(2015) Yu Sugimura et al.   PLANT PRODUCTION SCIENCE

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

PROTEIN TARGETING TO STARCH Is Required for Localising GRANULE-BOUND STARCH SYNTHASE to Starch Granules and for Normal Amylose Synthesis in Arabidopsis

(2015) David Seung et al.   PLOS BIOLOGY

Application of next-generation sequencing technology to study genetic diversity and identify unique SNP markers in bread wheat from Kazakhstan

(2014) Yuri Shavrukov et al.   BMC PLANT BIOLOGY

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Genetic controls on starch amylose content in wheat and rice grains

(2014) PARVIZ FASAHAT et al.   JOURNAL OF GENETICS

Next-generation sequencing for understanding and accelerating crop domestication

(2012) R. J. Henry   Briefings in Functional Genomics

Molecular Characterization of a Spontaneous Waxy Starch Mutation in Cassava

(2012) Pornsak Aiemnaka et al.   CROP SCIENCE

Domestication and geographic origin ofOryza sativain China: insights from multilocus analysis of nucleotide variation ofO. sativaandO. rufipogon

(2012) Xin Wei et al.   MOLECULAR ECOLOGY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Single nucleotide polymorphism discovery from wheat next-generation sequence data

(2012) Kaitao Lai et al.   PLANT BIOTECHNOLOGY JOURNAL

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing†

(2011) Ardashir Kharabian-Masouleh et al.   PLANT BIOTECHNOLOGY JOURNAL

Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L.

(2010) G. Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein

(2008) Elke M Lohmeier-Vogel et al.   BMC PLANT BIOLOGY

Waxy gene haplotypes: Associations with pasting properties in an international rice germplasm collection

(2008) Ming-Hsuan Chen et al.   JOURNAL OF CEREAL SCIENCE