Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era

The AVRDC – The World Vegetable Center mungbean (Vigna radiata) core and mini core collections

(2015) Roland Schafleitner et al.   BMC GENOMICS

Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

(2015) V. Kumar et al.   DNA RESEARCH

Crossovers are associated with mutation and biased gene conversion at recombination hotspots

(2015) Barbara Arbeithuber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Current challenges and future perspectives of plant and agricultural biotechnology

(2015) Menachem Moshelion et al.   TRENDS IN BIOTECHNOLOGY

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

(2015) Russell B. Corbett-Detig et al.   PLOS BIOLOGY

An overview of global rice production, supply, trade, and consumption

(2014) Sumithra Muthayya et al.   Annals of the New York Academy of Sciences

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora

(2014) Thierry Leroy et al.   GENETICA

Understanding rice domestication and implications for cultivar improvement

(2013) Tao Sang et al.   CURRENT OPINION IN PLANT BIOLOGY

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Resequencing rice genomes: an emerging new era of rice genomics

(2013) Xuehui Huang et al.   TRENDS IN GENETICS

Genomics of gene banks: A case study in rice

(2012) Susan R. McCouch et al.   AMERICAN JOURNAL OF BOTANY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation

(2012) T. L. Odong et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Allele mining in crops: Prospects and potentials

(2010) G. Ram Kumar et al.   BIOTECHNOLOGY ADVANCES

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Development of an allele-mining set in rice using a heuristic algorithm and SSR genotype data with least redundancy for the post-genomic era

(2010) Weiguo Zhao et al.   MOLECULAR BREEDING

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Even small SNP clusters are non-randomly distributed: is this evidence of mutational non-independence?

(2010) W. Amos   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Food Security: The Challenge of Feeding 9 Billion People

(2010) H. C. J. Godfray et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Heterogeneous distribution of SNPs in the human genome: Microsatellites as predictors of nucleotide diversity and divergence

(2009) Miguel A. Varela et al.   GENOMICS

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation?

(2009) C. Alonso-Blanco et al.   PLANT CELL

Cryptic Variation in the Human Mutation Rate

(2009) Alan Hodgkinson et al.   PLOS BIOLOGY

Leveraging natural diversity: back through the bottleneck

(2008) MJ Kovach et al.   CURRENT OPINION IN PLANT BIOLOGY

Apparent mutational hotspots and long distance linkage disequilibrium resulting from a bottleneck

(2008) M. I. TENAILLON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Common and rare variants in multifactorial susceptibility to common diseases

(2008) Walter Bodmer et al.   NATURE GENETICS

Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations

(2008) Taras K. Oleksyk et al.   PLoS One