Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies

Adaptive introgression: how polyploidy reshapes gene flow landscapes

(2021) Roswitha Schmickl et al.   NEW PHYTOLOGIST

Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

(2021) K. K. S. Layton et al.   Nature Climate Change

Towards complete and error-free genome assemblies of all vertebrate species

(2021) Arang Rhie et al.   NATURE

The role of genome duplication in big sagebrush growth and fecundity

(2021) Bryce A. Richardson et al.   AMERICAN JOURNAL OF BOTANY

A beginner's guide to low‐coverage whole genome sequencing for population genomics

(2021) Runyang Nicolas Lou et al.   MOLECULAR ECOLOGY

Intraspecific variation in surface water uptake in a perennial desert shrub

(2020) Andrii Zaiats et al.   FUNCTIONAL ECOLOGY

Assessment of population genetics and climatic variability can refine climate‐informed seed transfer guidelines

(2020) Rob Massatti et al.   RESTORATION ECOLOGY

Simulating the effects of local adaptation and life history on the ability of plants to track climate shifts

(2020) Emily V Moran   AoB Plants

Adaptation to drought is coupled with slow growth, but independent from phenology in marginal silver fir ( Abies alba Mill.) populations

(2020) Katalin Csilléry et al.   Evolutionary Applications

Importance of species translocations under rapid climate change

(2020) Nathalie Butt et al.   CONSERVATION BIOLOGY

Genetic mixing for population management: from genetic rescue to provenancing

(2020) Ary A. Hoffmann et al.   Evolutionary Applications

Evolutionary principles and genetic considerations for guiding conservation interventions under climate change

(2020) Juan D. Gaitán‐Espitia et al.   GLOBAL CHANGE BIOLOGY

Whole genome resequencing reveals genomic regions associated with thermal adaptation in redband trout

(2020) Zhongqi Chen et al.   MOLECULAR ECOLOGY

The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes

(2020) Annabel Whibley et al.   Molecular Ecology Resources

Individual heterozygosity predicts translocation success in threatened desert tortoises

(2020) Peter A. Scott et al.   SCIENCE

Assisted Migration Field Tests in Canada and Mexico: Lessons, Limitations, and Challenges

(2020) Cuauhtémoc Sáenz-Romero et al.   Forests

How many and when? Optimising targeted gene flow for a step change in the environment

(2019) Ella Kelly et al.   ECOLOGY LETTERS

Does gene flow aggravate or alleviate maladaptation to environmental stress in small populations?

(2019) Sarah W. Fitzpatrick et al.   Evolutionary Applications

Aquatic Landscape Genomics and Environmental Effects on Genetic Variation

(2019) Jared A. Grummer et al.   TRENDS IN ECOLOGY & EVOLUTION

A multidisciplinary approach to inform assisted migration of the restricted rainforest tree, Fontainea rostrata

(2019) Gabriel C. Conroy et al.   PLoS One

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Tropicalisation of temperate reefs: Implications for ecosystem functions and management actions

(2019) Adriana Vergés et al.   FUNCTIONAL ECOLOGY

Global warming impairs stock–recruitment dynamics of corals

(2019) Terry P. Hughes et al.   NATURE

Freezing resistance, safety margins, and survival vary among big sagebrush populations across the western United States

(2019) Brynne E. Lazarus et al.   AMERICAN JOURNAL OF BOTANY

Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

(2019) Iliana B. Baums et al.   ECOLOGICAL APPLICATIONS

Range‐wide variation in local adaptation and phenotypic plasticity of fitness‐related traits in Fagus sylvatica and their implications under climate change

(2019) Homero Gárate‐Escamilla et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Rare genetic variation and balanced polymorphisms are important for survival in global change conditions

(2019) Reid S. Brennan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

(2019) Pascal Milesi et al.   Evolutionary Applications

Evaluating genomic data for management of local adaptation in a changing climate: A lodgepole pine case study

(2019) Colin R. Mahony et al.   Evolutionary Applications

Remote sensing of ploidy level in quaking aspen ( Populus tremuloides Michx.)

(2019) Benjamin Blonder et al.   JOURNAL OF ECOLOGY

Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow

(2019) Luke Browne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress-resistant corals may not acclimatize to ocean warming but maintain heat tolerance under cooler temperatures

(2019) Verena Schoepf et al.   Nature Communications

Sex-dependent dominance maintains migration supergene in rainbow trout

(2019) Devon E. Pearse et al.   Nature Ecology & Evolution

The 1912 Douglas-Fir Heredity Study: Long-Term Effects of Climatic Transfer Distance on Growth and Survival

(2019) J Bradley St. Clair et al.   JOURNAL OF FORESTRY

Mix and match: regional admixture provenancing strikes a balance among different seed-sourcing strategies for ecological restoration

(2018) Anna Bucharova et al.   CONSERVATION GENETICS

Physiological and genomic signatures of evolutionary thermal adaptation in redband trout from extreme climates

(2018) Zhongqi Chen et al.   Evolutionary Applications

Evolution for extreme living: variation in mitochondrial cytochrome c oxidase genes correlated with elevation in pikas (genus Ochotona )

(2018) Katherine A. Solari et al.   Integrative Zoology

Adaptive population divergence and directional gene flow across steep elevational gradients in a climate-sensitive mammal

(2018) Matthew D. Waterhouse et al.   MOLECULAR ECOLOGY

Mechanisms of thermal adaptation and evolutionary potential of conspecific populations to changing environments

(2018) Zhongqi Chen et al.   MOLECULAR ECOLOGY

Earth BioGenome Project: Sequencing life for the future of life

(2018) Harris A. Lewin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

Genetic diversity of Ceiba pentandra in Colombian seasonally dry tropical forest: Implications for conservation and management

(2018) Kelly T. Bocanegra-González et al.   BIOLOGICAL CONSERVATION

Climate-based seed transfer of a widespread shrub: population shifts, restoration strategies and the trailing edge

(2018) Bryce A. Richardson et al.   ECOLOGICAL APPLICATIONS

Genomics and conservation units: The genetic basis of adult migration timing in Pacific salmonids

(2018) Robin S. Waples et al.   Evolutionary Applications

The Peril of Gene-Targeted Conservation

(2018) Marty Kardos et al.   TRENDS IN ECOLOGY & EVOLUTION

Amplifying plant disease risk through assisted migration

(2018) Allison B. Simler et al.   Conservation Letters

Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient

(2018) Katherine A. Solari et al.   PLoS One

Climate drives adaptive genetic responses associated with survival in big sagebrush (Artemisia tridentata)

(2017) Lindsay Chaney et al.   Evolutionary Applications

Growth gains from selective breeding in a spruce hybrid zone do not compromise local adaptation to climate

(2017) Ian R. MacLachlan et al.   Evolutionary Applications

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

(2017) Sarah P. Flanagan et al.   Evolutionary Applications

Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

(2017) Angela P. Fuentes-Pardo et al.   MOLECULAR ECOLOGY

Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis

(2017) Zachariah Gompert et al.   Molecular Ecology Resources

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Coherent synthesis of genomic associations with phenotypes and home environments

(2017) Jesse R. Lasky et al.   Molecular Ecology Resources

The NorWeST Summer Stream Temperature Model and Scenarios for the Western U.S.: A Crowd-Sourced Database and New Geospatial Tools Foster a User Community and Predict Broad Climate Warming of Rivers and Streams

(2017) Daniel J. Isaak et al.   WATER RESOURCES RESEARCH

Genomic models predict successful coral adaptation if future ocean warming rates are reduced

(2017) Rachael A. Bay et al.   Science Advances

Alignment of threat, effort, and perceived success in North American conservation translocations

(2016) Typhenn A. Brichieri-Colombi et al.   CONSERVATION BIOLOGY

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Will phenotypic plasticity affecting flowering phenology keep pace with climate change?

(2016) Bryce A. Richardson et al.   GLOBAL CHANGE BIOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Linking Genetic Variation in Adaptive Plant Traits to Climate in Tetraploid and Octoploid Basin Wildrye [Leymus cinereus (Scribn. & Merr.) A. Love] in the Western U.S.

(2016) R. C. Johnson et al.   PLoS One

Assisted migration within species range ignores biotic interactions and lacks evidence

(2016) Anna Bucharova   RESTORATION ECOLOGY

Climate change disables coral bleaching protection on the Great Barrier Reef

(2016) T. D. Ainsworth et al.   SCIENCE

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Plants and climate change: complexities and surprises

(2015) C. Parmesan et al.   ANNALS OF BOTANY

Wildlife restoration: Mainstreaming translocations to keep common species common

(2015) David M. Watson et al.   BIOLOGICAL CONSERVATION

Ecological and evolutionary impacts of changing climatic variability

(2015) Diego P. Vázquez et al.   BIOLOGICAL REVIEWS

Transcriptomic response to heat stress among ecologically divergent populations of redband trout

(2015) Shawn R Narum et al.   BMC GENOMICS

Population genetic structure of Iris ensata on sky-islands and its implications for assisted migration

(2015) Yue-E Xiao et al.   CONSERVATION GENETICS

Reducing the loss of genetic diversity associated with assisted colonization-like introductions of animals

(2015) Jaana Kekkonen et al.   Current Zoology

Translocated to the fringe: genetic and niche variation in bighorn sheep of the Great Basin and northern Mojave deserts

(2015) Jason L. Malaney et al.   DIVERSITY AND DISTRIBUTIONS

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Morphometry and average temperature affect lake stratification responses to climate change

(2015) Benjamin M. Kraemer et al.   GEOPHYSICAL RESEARCH LETTERS

REVIEW: Translocation tactics: a framework to support the IUCN Guidelines for wildlife translocations and improve the quality of applied methods

(2015) William G. Batson et al.   JOURNAL OF APPLIED ECOLOGY

Projections of Contemporary and Future Climate Niche for Wyoming Big Sagebrush (Artemisia tridentatasubsp.wyomingensis): A Guide for Restoration

(2015) Shannon M. Still et al.   NATURAL AREAS JOURNAL

Considerations for restoring temperate forests of tomorrow: forest restoration, assisted migration, and bioengineering

(2015) R. Kasten Dumroese et al.   NEW FORESTS

Status and Conservation of Interior Redband Trout in the Western United States

(2015) Clint C. Muhlfeld et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Local climate and cultivation, but not ploidy, predict functional trait variation in Bouteloua gracilis (Poaceae)

(2015) Bradley J. Butterfield et al.   PLANT ECOLOGY

Genetic rescue to the rescue

(2015) Andrew R. Whiteley et al.   TRENDS IN ECOLOGY & EVOLUTION

Reducing the loss of genetic diversity associated with assisted colonization-like introductions of animals

(2015) Jaana Kekkonen et al.   Current Zoology

First-generation fitness consequences of interpopulational hybridisation in a Great Barrier Reef coral and its implications for assisted migration management

(2014) M. J. H. van Oppen et al.   CORAL REEFS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Genes predict long distance migration and large body size in a migratory fish, Pacific lamprey

(2014) Jon E. Hess et al.   Evolutionary Applications

Comparative genetic responses to climate in the varieties of Pinus ponderosa and Pseudotsuga menziesii: Reforestation

(2014) Gerald E. Rehfeldt et al.   FOREST ECOLOGY AND MANAGEMENT

Assisted migration: Introduction to a multifaceted concept

(2014) Catherine Ste-Marie et al.   FORESTRY CHRONICLE

Endangered Quino checkerspot butterfly and climate change: Short-term success but long-term vulnerability?

(2014) Camille Parmesan et al.   JOURNAL OF INSECT CONSERVATION

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Climate-change adaptation: Designer reefs

(2014) Amanda Mascarelli   NATURE

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome

(2013) Matthew A Lemay et al.   BMC GENOMICS

Genecology and seed zones for tapertip onion in the US Great Basin

(2013) R.C. Johnson et al.   Botany

Resilience to Stress and Disturbance, and Resistance to Bromus tectorum L. Invasion in Cold Desert Shrublands of Western North America

(2013) Jeanne C. Chambers et al.   ECOSYSTEMS

Genetic variation in adaptive traits and seed transfer zones forPseudoroegneria spicata(bluebunch wheatgrass) in the northwestern United States

(2013) John Bradley St. Clair et al.   Evolutionary Applications

Evolutionary and plastic responses to climate change in terrestrial plant populations

(2013) Steven J. Franks et al.   Evolutionary Applications

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Adaptive divergence along environmental gradients in a climate-change-sensitive mammal

(2013) P. Henry et al.   Ecology and Evolution

Deep sequencing of amplicons reveals widespread intraspecific hybridization and multiple origins of polyploidy in big sagebrush (Artemisia tridentata ; Asteraceae)

(2012) Bryce A. Richardson et al.   AMERICAN JOURNAL OF BOTANY

Managed Relocation: Integrating the Scientific, Regulatory, and Ethical Challenges

(2012) Mark W. Schwartz et al.   BIOSCIENCE

Securing the Demographic and Genetic Future of Tuatara through Assisted Colonization

(2012) KIMBERLY A. MILLER et al.   CONSERVATION BIOLOGY

Whole genome duplication in a threatened grassland plant and the efficacy of seed transfer zones

(2012) Paul M. Severns et al.   DIVERSITY AND DISTRIBUTIONS

DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN

(2012) Melissa H. Pespeni et al.   EVOLUTION

What is wrong with current translocations? A review and a decision-making proposal

(2012) Irene Pérez et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Immigrants and refugees: the importance of dispersal in mediating biotic attrition under climate change

(2012) Alex S. Anderson et al.   GLOBAL CHANGE BIOLOGY

Understanding transgenerational epigenetic inheritance via the gametes in mammals

(2012) Lucia Daxinger et al.   NATURE REVIEWS GENETICS

Evolutionary rescue and adaptation to abrupt environmental change depends upon the history of stress

(2012) A. Gonzalez et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Epialleles in plant evolution

(2012) Detlef Weigel et al.   GENOME BIOLOGY

Impacts of climate change on August stream discharge in the Central-Rocky Mountains

(2011) Jason C. Leppi et al.   CLIMATIC CHANGE

Predicting the Probability of Outbreeding Depression

(2011) RICHARD FRANKHAM et al.   CONSERVATION BIOLOGY

Assessing the benefits and risks of translocations in changing environments: a genetic perspective

(2011) Andrew R. Weeks et al.   Evolutionary Applications

The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals

(2011) Ruth D. Gates et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Present Limits to Heat-Adaptability in Corals and Population-Level Responses to Climate Extremes

(2011) Bernhard M. Riegl et al.   PLoS One

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Influences of Habitat and Hybridization on the Genetic Structure of Redband Trout in the Upper Snake River Basin, Idaho

(2011) Christine C. Kozfkay et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Translocation of species, climate change, and the end of trying to recreate past ecological communities

(2011) Chris D Thomas   TRENDS IN ECOLOGY & EVOLUTION

Interacting Effects of Phenotypic Plasticity and Evolution on Population Persistence in a Changing Climate

(2010) THOMAS E. REED et al.   CONSERVATION BIOLOGY

Move it or lose it? The ecological ethics of relocating species under climate change

(2010) Ben A. Minteer et al.   ECOLOGICAL APPLICATIONS

Assisted migration to address climate change: recommendations for aspen reforestation in western Canada

(2010) Laura K. Gray et al.   ECOLOGICAL APPLICATIONS

Building evolutionary resilience for conserving biodiversity under climate change

(2010) Carla M. Sgrò et al.   Evolutionary Applications

Adaptation of redband trout in desert and montane environments

(2010) SHAWN R. NARUM et al.   MOLECULAR ECOLOGY

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

(2010) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

From Reintroduction to Assisted Colonization: Moving along the Conservation Translocation Spectrum

(2010) Philip J. Seddon   RESTORATION ECOLOGY

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

Biotic and Abiotic Factors Related to Redband Trout Occurrence and Abundance in Desert and Montane Streams

(2010) Kevin A. Meyer et al.   WESTERN NORTH AMERICAN NATURALIST

Assisted migration of plants: Changes in latitudes, changes in attitudes

(2009) Pati Vitt et al.   BIOLOGICAL CONSERVATION

The velocity of climate change

(2009) Scott R. Loarie et al.   NATURE

Multidimensional evaluation of managed relocation

(2009) D. M. Richardson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary Ecology of Redband Trout

(2009) Kenneth P. Currens et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Assisted colonization: good intentions and dubious risk assessment

(2009) Anthony Ricciardi et al.   TRENDS IN ECOLOGY & EVOLUTION

An Assessment of Invasion Risk from Assisted Migration

(2008) JILLIAN M. MUELLER et al.   CONSERVATION BIOLOGY

Seed supply for broadscale restoration: maximizing evolutionary potential

(2008) Linda M. Broadhurst et al.   Evolutionary Applications

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Management of novel ecosystems: are novel approaches required?

(2008) Timothy R Seastedt et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

ECOLOGY: Assisted Colonization and Rapid Climate Change

(2008) O. Hoegh-Guldberg et al.   SCIENCE

Assisted colonization in a changing climate: a test-study using two U.K. butterflies

(2008) Stephen G. Willis et al.   Conservation Letters

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION