Coherent synthesis of genomic associations with phenotypes and home environments

Genotype by environment (climate) interaction improves genomic prediction for production traits in US Holstein cattle

(2017) F. Tiezzi et al.   JOURNAL OF DAIRY SCIENCE

An Integrated Model of Phenotypic Trait Changes and Site-Specific Sequence Evolution

(2017) Eli Levy Karin et al.   SYSTEMATIC BIOLOGY

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Estimating Variance Components in Functional Linear Models With Applications to Genetic Heritability

(2016) Matthew Reimherr et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Exploring natural variation ofPinus pinasterAiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites?

(2016) Mónica Meijón et al.   MOLECULAR ECOLOGY

The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana

(2016) Matthew W. Horton et al.   PLANT CELL AND ENVIRONMENT

PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties

(2016) Magdalena Szechyńska-Hebda et al.   PLANT CELL REPORTS

G = E: What GWAS Can Tell Us about the Environment

(2016) Suzanne H. Gage et al.   PLoS Genetics

Population Genomics for Understanding Adaptation in Wild Plant Species

(2015) Detlef Weigel et al.   Annual Review of Genetics

Soft Shoulders Ahead: Spurious Signatures of Soft and Partial Selective Sweeps Result from Linked Hard Sweeps

(2015) D. R. Schrider et al.   GENETICS

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Genomic variation across landscapes: insights and applications

(2015) Jason G. Bragg et al.   NEW PHYTOLOGIST

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting classic clines in Drosophila melanogaster in the age of genomics

(2015) Jeffrey R. Adrion et al.   TRENDS IN GENETICS

Genome-environment associations in sorghum landraces predict adaptive traits

(2015) J. R. Lasky et al.   Science Advances

Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping

(2015) Colette Broekgaarden et al.   PLoS One

Adaptations between Ecotypes and along Environmental Gradients in Panicum virgatum

(2014) David B. Lowry et al.   AMERICAN NATURALIST

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

(2014) Jesse R. Lasky et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

Lagging adaptation to warming climate in Arabidopsis thaliana

(2014) A. M. Wilczek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

A Population Genetic Signal of Polygenic Adaptation

(2014) Jeremy J. Berg et al.   PLoS Genetics

A simulation study of gene-by-environment interactions in GWAS implies ample hidden effects

(2014) Urko M. Marigorta et al.   Frontiers in Genetics

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Finding Novel Genes by Testing G × E Interactions in a Genome-Wide Association Study

(2013) W. James Gauderman et al.   GENETIC EPIDEMIOLOGY

Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana

(2013) Y. Li et al.   GENETICS

Complex Patterns of Local Adaptation in Teosinte

(2013) Tanja Pyhäjärvi et al.   Genome Biology and Evolution

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

LESION SIMULATING DISEASE1, ENHANCED DISEASE SUSCEPTIBILITY1, and PHYTOALEXIN DEFICIENT4 Conditionally Regulate Cellular Signaling Homeostasis, Photosynthesis, Water Use Efficiency, and Seed Yield in Arabidopsis

(2013) W. Wituszynska et al.   PLANT PHYSIOLOGY

Genome-Wide Association Mapping Combined with Reverse Genetics Identifies New Effectors of Low Water Potential-Induced Proline Accumulation in Arabidopsis

(2013) P. E. Verslues et al.   PLANT PHYSIOLOGY

Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana

(2013) J. Agren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation

(2013) J. T. Lovell et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

(2013) Diego Jarquín et al.   THEORETICAL AND APPLIED GENETICS

Ten years of landscape genetics

(2013) Stéphanie Manel et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing

(2012) Maki Murayama et al.   JOURNAL OF EXPERIMENTAL BOTANY

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

(2012) S. R. Keller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Source verification of mis-identified Arabidopsis thaliana accessions

(2011) Alison E. Anastasio et al.   PLANT JOURNAL

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

Climate-driven local adaptation of ecophysiology and phenology in balsam poplar, Populus balsamifera L. (Salicaceae)

(2010) Stephen R. Keller et al.   AMERICAN JOURNAL OF BOTANY

Methods for Investigating Gene-Environment Interactions in Candidate Pathway and Genome-Wide Association Studies

(2010) Duncan Thomas   Annual Review of Public Health

LIFE-HISTORY QTLS AND NATURAL SELECTION ON FLOWERING TIME IN BOECHERA STRICTA, A PERENNIAL RELATIVE OF ARABIDOPSIS

(2010) JILL T. ANDERSON et al.   EVOLUTION

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?

(2010) M. C. HALL et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

New approaches to population stratification in genome-wide association studies

(2010) Alkes L. Price et al.   NATURE REVIEWS GENETICS

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

cdpop: A spatially explicit cost distance population genetics program

(2009) ERIN L. LANDGUTH et al.   Molecular Ecology Resources

The Role of Geography in Human Adaptation

(2009) Graham Coop et al.   PLoS Genetics

Climate change mitigation: A spatial analysis of global land suitability for clean development mechanism afforestation and reforestation

(2008) Robert J. Zomer et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Gene-Environment Interaction in Genome-Wide Association Studies

(2008) C. E. Murcray et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Next-generation genetics in plants

(2008) Magnus Nordborg et al.   NATURE

Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense

(2008) K.-C. Kim et al.   PLANT CELL

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One