Whole genome resequencing reveals genomic regions associated with thermal adaptation in redband trout

Detecting genomic variation underlying phenotypic characteristics of reintroduced Coho salmon (Oncorhynchus kisutch)

(2020) Rebekah L. Horn et al.   CONSERVATION GENETICS

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Contrasting genomic shifts underlie parallel phenotypic evolution in response to fishing

(2019) Nina O. Therkildsen et al.   SCIENCE

Conservation and Management of Salmon in the Age of Genomics

(2019) Robin S. Waples et al.   Annual Review of Animal Biosciences

Sex-dependent dominance maintains migration supergene in rainbow trout

(2019) Devon E. Pearse et al.   Nature Ecology & Evolution

Physiological and genomic signatures of evolutionary thermal adaptation in redband trout from extreme climates

(2018) Zhongqi Chen et al.   Evolutionary Applications

Rapid genetic adaptation to a novel environment despite a genome-wide reduction in genetic diversity

(2018) Janna R. Willoughby et al.   MOLECULAR ECOLOGY

Mechanisms of thermal adaptation and evolutionary potential of conspecific populations to changing environments

(2018) Zhongqi Chen et al.   MOLECULAR ECOLOGY

Utility of pooled sequencing for association mapping in nonmodel organisms

(2018) Steven J. Micheletti et al.   Molecular Ecology Resources

Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon

(2018) Shawn R. Narum et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead

(2018) Steven J. Micheletti et al.   BMC EVOLUTIONARY BIOLOGY

Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

(2017) Angela P. Fuentes-Pardo et al.   MOLECULAR ECOLOGY

Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach

(2017) María Inés Fariello et al.   MOLECULAR ECOLOGY

What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?

(2017) Emily B. Josephs et al.   NEW PHYTOLOGIST

Sphingosine Kinases and Sphingosine 1-Phosphate Receptors: Signaling and Actions in the Cardiovascular System

(2017) Alessandro Cannavo et al.   Frontiers in Pharmacology

Genomic models predict successful coral adaptation if future ocean warming rates are reduced

(2017) Rachael A. Bay et al.   Science Advances

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

(2017) Daniel J. Prince et al.   Science Advances

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

(2016) Nina Overgaard Therkildsen et al.   Molecular Ecology Resources

Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing

(2016) Jon E. Hess et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptomic response to heat stress among ecologically divergent populations of redband trout

(2015) Shawn R Narum et al.   BMC GENOMICS

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout ( Oncorhynchus mykiss gairdneri )

(2015) Michael R. Garvin et al.   Genome Biology and Evolution

SAMBLASTER: fast duplicate marking and structural variant read extraction

(2014) G. G. Faust et al.   BIOINFORMATICS

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Thermal adaptation and acclimation of ectotherms from differing aquatic climates

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stream isotherm shifts from climate change and implications for distributions of ectothermic organisms

(2012) Daniel J. Isaak et al.   GLOBAL CHANGE BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Influences of Habitat and Hybridization on the Genetic Structure of Redband Trout in the Upper Snake River Basin, Idaho

(2011) Christine C. Kozfkay et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Temperature and salmonid reproduction: implications for aquaculture

(2010) N. W. Pankhurst et al.   JOURNAL OF FISH BIOLOGY

Adaptation of redband trout in desert and montane environments

(2010) SHAWN R. NARUM et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Biotic and Abiotic Factors Related to Redband Trout Occurrence and Abundance in Desert and Montane Streams

(2010) Kevin A. Meyer et al.   WESTERN NORTH AMERICAN NATURALIST

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Environment, antecedents and climate change: lessons from the study of temperature physiology and river migration of salmonids

(2009) A. P. Farrell   JOURNAL OF EXPERIMENTAL BIOLOGY

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE