Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

(2016) Garrett J. McKinney et al.   Molecular Ecology Resources

ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data

(2015) Gabriel R. A. Margarido et al.   PLoS Computational Biology

Microsatellite Development and Flow Cytometry in the African Tree Genus Afzelia (Fabaceae, Caesalpinioideae) Reveal a Polyploid Complex

(2015) Armel S. L. Donkpegan et al.   Applications in Plant Sciences

Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants

(2014) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Genetic Diversity and Differentiation of Juniperus thurifera in Spain and Morocco as Determined by SSR

(2014) Helena Teixeira et al.   PLoS One

Microsatellite and flow cytometry analysis to help understand the origin of Dioscorea alata polyploids

(2013) A. Nemorin et al.   ANNALS OF BOTANY

Efficient analysis of ploidy levels in plant evolutionary ecology

(2013) Serdar Dirihan et al.   CARYOLOGIA

Experimental evidence for ecological selection on genome variation in the wild

(2013) Zachariah Gompert et al.   ECOLOGY LETTERS

Continental-scale assessment of genetic diversity and population structure in quaking aspen (Populus tremuloides)

(2013) Colin M. Callahan et al.   JOURNAL OF BIOGEOGRAPHY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids

(2013) Antonio A. F. Garcia et al.   Scientific Reports

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Widespread Triploidy in Western North American Aspen (Populus tremuloides)

(2012) Karen E. Mock et al.   PLoS One

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)

(2012) M. Chester et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Quantifying population structure using the F-model

(2010) OSCAR E. GAGGIOTTI et al.   Molecular Ecology Resources

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Coexistence of diploids and triploids in a Saharan relict olive: Evidence from nuclear microsatellite and flow cytometry analyses

(2009) Guillaume Besnard et al.   COMPTES RENDUS BIOLOGIES

An efficient high-throughput flow cytometric method for estimating DNA ploidy level in plants

(2009) A. Cousin et al.   CYTOMETRY PART A

Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy

(2009) E. F. Attiyeh et al.   GENOME RESEARCH

Clonal dynamics in western North American aspen (Populus tremuloides)

(2008) K. E. MOCK et al.   MOLECULAR ECOLOGY