Erosion and deposition divergently affect the structure of soil bacterial communities and functionality

Erosion reduces soil microbial diversity, network complexity and multifunctionality

(2021) Liping Qiu et al.   ISME Journal

Soil actinobacteria tend to have neutral interactions with other co‐occurring microorganisms, especially under oligotrophic conditions

(2021) Bingfa Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Important ecophysiological roles of non-dominant Actinobacteria in plant residue decomposition, especially in less fertile soils

(2021) Yuanyuan Bao et al.   Microbiome

Species pool and local ecological assembly processes shape the β-diversity of diazotrophs in grassland soils

(2021) Yansu Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbial community structure and function mainly respond to indirect effects in a multifactorial climate manipulation experiment

(2020) Evi Deltedesco et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological clusters based on responses of soil microbial phylotypes to precipitation explain ecosystem functions

(2020) Ying Wu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Rusty sink of rhizodeposits and associated keystone microbiomes

(2020) Peduruhewa H. Jeewani et al.   SOIL BIOLOGY & BIOCHEMISTRY

A network approach to elucidate and prioritize microbial dark matter in microbial communities

(2020) Tatyana Zamkovaya et al.   ISME Journal

Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment

(2020) Kunkun Fan et al.   ISME Journal

Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease

(2020) Sang-Moo Lee et al.   ISME Journal

Land use and climate change impacts on global soil erosion by water (2015-2070)

(2020) Pasquale Borrelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil organic matter and salinity as critical factors affecting the bacterial community and function of Phragmites australis dominated riparian and coastal wetlands

(2020) Zifang Chi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biogeographic patterns of microbial co-occurrence ecological networks in six American forests

(2020) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of long-term grazing exclusion on soil microbial community composition and nutrient availability

(2019) Zhe Wang et al.   BIOLOGY AND FERTILITY OF SOILS

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Competitive interaction with keystone taxa induced negative priming under biochar amendments

(2019) Lijun Chen et al.   Microbiome

Increased microbial growth, biomass and turnover drive soil organic carbon accumulation at higher plant diversity

(2019) Judith Prommer et al.   GLOBAL CHANGE BIOLOGY

Fungal richness contributes to multifunctionality in boreal forest soil

(2019) Jing Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Vegetation biomass and soil moisture coregulate bacterial community succession under altered precipitation regimes in a desert steppe in northwestern China

(2019) Xiaofan Na et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in soil physico-chemical properties following vegetation restoration mediate bacterial community composition and diversity in Changting, China

(2019) Xiaolong Hou et al.   ECOLOGICAL ENGINEERING

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Soil carbon and nitrogen fraction dynamics affected by tillage erosion

(2019) Xiao-Jun Nie et al.   Scientific Reports

Suppressed N fixation and diazotrophs after four decades of fertilization

(2019) Kunkun Fan et al.   Microbiome

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

(2019) Jennifer E. Schmidt et al.   Microbiome

Microbial resistance promotes plant production in a four-decade nutrient fertilization experiment

(2019) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Role of Soil Erosion in Biogeochemical Cycling of Essential Elements: Carbon, Nitrogen, and Phosphorus

(2018) Asmeret Asefaw Berhe et al.   Annual Review of Earth and Planetary Sciences

Spatial distribution of microbial community composition along a steep slope plot of the Loess Plateau

(2018) Qiqi Sun et al.   APPLIED SOIL ECOLOGY

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Deciphering the associations between soil microbial diversity and ecosystem multifunctionality driven by long-term fertilization management

(2018) Gongwen Luo et al.   FUNCTIONAL ECOLOGY

The mineralization and sequestration of organic carbon in relation to agricultural soil erosion

(2018) Haibing Xiao et al.   GEODERMA

Distribution and functional analysis of the phosphopantetheinyl transferase superfamily inActinomycetalesmicroorganisms

(2018) Jeong Ho Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial communities in soil become sensitive to drought under intensive grazing

(2018) Stephanie D. Jurburg et al.   SCIENCE OF THE TOTAL ENVIRONMENT

New insights into the role of microbial community composition in driving soil respiration rates

(2018) Yu-Rong Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

(2018) Roland C. Wilhelm et al.   ISME Journal

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems

(2018) Shuo Jiao et al.   Microbiome

Microbes drive global soil nitrogen mineralization and availability

(2018) Zhaolei Li et al.   GLOBAL CHANGE BIOLOGY

Soil moisture drives microbial controls on carbon decomposition in two subtropical forests

(2018) Gangsheng Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of shrubs on soil nutrients and enzymatic activities over a 0–100 cm soil profile in the desert-loess transition zone

(2018) Yufei Yao et al.   CATENA

Microbial diversity and soil functions

(2017) P. Nannipieri et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Microbial richness and composition independently drive soil multifunctionality

(2017) Manuel Delgado-Baquerizo et al.   FUNCTIONAL ECOLOGY

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

(2017) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

(2017) Bram Beckers et al.   Microbiome

Evolution and Ecology ofActinobacteriaand Their Bioenergy Applications

(2016) Gina R. Lewin et al.   Annual Review of Microbiology

Strategic tillage increased the relative abundance of Acidobacteria but did not impact on overall soil microbial properties of a 19-year no-till Solonetz

(2016) Hongwei Liu et al.   BIOLOGY AND FERTILITY OF SOILS

Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition

(2016) Cheng Wang et al.   Biotechnology for Biofuels

Erosion, deposition and soil carbon: A review of process-level controls, experimental tools and models to address C cycling in dynamic landscapes

(2016) Sebastian Doetterl et al.   EARTH-SCIENCE REVIEWS

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression

(2016) Menno van der Voort et al.   ECOLOGY LETTERS

Effect of breakdown and dispersion of soil aggregates by erosion on soil CO2 emission

(2016) Shoucai Wei et al.   GEODERMA

Long-term fertilization increases the temperature sensitivity of OC mineralization in soil aggregates of a highland agroecosystem

(2016) Xiaorong Wei et al.   GEODERMA

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Diversity and distribution patterns of acidobacterial communities in the black soil zone of northeast China

(2016) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes

(2016) Gabriel A. Al-Ghalith et al.   PLoS Computational Biology

Microbial responses to erosion-induced soil physico-chemical property changes in the hilly red soil region of southern China

(2015) Zhongwu Li et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Differential responses of soil bacterial taxa to long-term P, N, and organic manure application

(2015) Ying Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China

(2015) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate

(2015) Xin Jing et al.   Nature Communications

Microbial distribution in an eroded landscape: Buried A horizons support abundant and unique communities

(2014) B.L. Helgason et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

The fate of soil organic carbon upon erosion, transport and deposition in agricultural landscapes — A review of different concepts

(2014) F.M.S.A. Kirkels et al.   GEOMORPHOLOGY

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil aggregation and the stabilization of organic carbon as affected by erosion and deposition

(2014) Xiang Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Modeling soil moisture and oxygen effects on soil biogeochemical cycles including dissimilatory nitrate reduction to ammonium (DNRA)

(2013) Simonetta Rubol et al.   ADVANCES IN WATER RESOURCES

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial responses to simulated water erosion in relation to organic carbon dynamics on a hilly cropland in subtropical China

(2013) Jinquan Huang et al.   ECOLOGICAL ENGINEERING

Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community

(2013) Johannes Harter et al.   ISME Journal

Responses of soil heterotrophic respiration to moisture availability: An exploration of processes and models

(2013) Fernando E. Moyano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Grassland management influences spatial patterns of soil microbial communities

(2013) Emma J. Sayer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions

(2013) Jarrett E. K. Byrnes et al.   Methods in Ecology and Evolution

Colonization patterns of soil microbial communities in the Atacama Desert

(2013) Alexander Crits-Christoph et al.   Microbiome

Lateral gene transfer between theBacteroidetesandAcidobacteria: The case of α-l-rhamnosidases

(2012) Daniil G. Naumoff et al.   FEBS LETTERS

Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought

(2012) Nicholas J Bouskill et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

(2011) Noah Rosenzweig et al.   PLANT DISEASE

Effects of vegetation removal on soil properties and decomposer organisms

(2011) Jie Zhao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in variability of soil moisture alter microbial community C and N resource use

(2011) Lisa K. Tiemann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

The impact of agricultural soil erosion on biogeochemical cycling

(2010) John N. Quinton et al.   Nature Geoscience

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE