Species pool and local ecological assembly processes shape the β-diversity of diazotrophs in grassland soils

Distinct mechanisms shape soil bacterial and fungal co-occurrence networks in a mountain ecosystem

(2020) Jiabao Li et al.   FEMS MICROBIOLOGY ECOLOGY

Biogeographic patterns of microbial co-occurrence ecological networks in six American forests

(2020) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deterministic processes dominate soil methanotrophic community assembly in grassland soils

(2019) Yongping Kou et al.   GEODERMA

Climatic factors have unexpectedly strong impacts on soil bacterial β-diversity in 12 forest ecosystems

(2019) Yong Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Development of biological soil crust prompts convergent succession of prokaryotic communities

(2019) Lin Xu et al.   CATENA

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Fluctuating interaction network and time-varying stability of a natural fish community

(2018) Masayuki Ushio et al.   NATURE

Shifts in the importance of the species pool and environmental controls of epiphytic bryophyte richness across multiple scales

(2018) Nagore G. Medina et al.   OECOLOGIA

Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Linking bacterial community composition to soil salinity along environmental gradients

(2018) Kristin M. Rath et al.   ISME Journal

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Soil pH is a major driver of soil diazotrophic community assembly in Qinghai-Tibet alpine meadows

(2017) Yansu Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Scale-dependent key drivers controlling methane oxidation potential in Chinese grassland soils

(2017) Yongping Kou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environmental heterogeneity among lakes promotes hyper β-diversity across phytoplankton communities

(2016) Selma Maloufi et al.   FRESHWATER BIOLOGY

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Land-use intensification causes multitrophic homogenization of grassland communities

(2016) Martin M. Gossner et al.   NATURE

Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment

(2015) Mohammad Bahram et al.   ISME Journal

Species interactions and random dispersal rather than habitat filtering drive community assembly during early plant succession

(2015) Werner Ulrich et al.   OIKOS

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

(2015) Inés Martínez et al.   Cell Reports

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Environmental heterogeneity as a universal driver of species richness across taxa, biomes and spatial scales

(2014) Anke Stein et al.   ECOLOGY LETTERS

Community assembly, coexistence and the environmental filtering metaphor

(2014) Nathan J. B. Kraft et al.   FUNCTIONAL ECOLOGY

Environmental filtering affects soil fungal community composition more than dispersal limitation at regional scales

(2014) Stephanie N. Kivlin et al.   Fungal Ecology

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Beta diversity among prairie restorations increases with species pool size, but not through enhanced species sorting

(2014) Emily Grman et al.   JOURNAL OF ECOLOGY

Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence

(2013) Lauren C. Cline et al.   ENVIRONMENTAL MICROBIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

(2013) Hanna Farnelid et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Spatial Distributions and Seasonal Variations of Tropospheric Water Vapor Content over the Tibetan Plateau

(2013) Yuwei Zhang et al.   JOURNAL OF CLIMATE

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

(2013) Xiangzhen Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Environmental heterogeneity and β diversity of stream macroinvertebrate communities at intermediate spatial scales

(2013) Jani Heino et al.   Freshwater Science

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Intensive agriculture erodes β-diversity at large scales

(2012) Daniel S. Karp et al.   ECOLOGY LETTERS

Stochastic and deterministic drivers of spatial and temporal turnover in breeding bird communities

(2012) James C. Stegen et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Drivers of β-diversity along latitudinal gradients revisited

(2012) Hong Qian et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Patterns of elevational beta diversity in micro- and macroorganisms

(2012) Jianjun Wang et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Inferring community assembly mechanisms from functional diversity patterns: the importance of multiple assembly processes

(2012) Marko J. Spasojevic et al.   JOURNAL OF ECOLOGY

Diversity of Interaction Types and Ecological Community Stability

(2012) A. Mougi et al.   SCIENCE

Inferring local ecological processes amid species pool influences

(2012) Jean-Philippe Lessard et al.   TRENDS IN ECOLOGY & EVOLUTION

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Ecological assembly rules in plant communities-approaches, patterns and prospects

(2011) Lars Götzenberger et al.   BIOLOGICAL REVIEWS

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Community ecology in a warming world: The influence of temperature on interspecific interactions in marine systems

(2011) Rebecca L. Kordas et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Disentangling the Drivers of   Diversity Along Latitudinal and Elevational Gradients

(2011) N. J. B. Kraft et al.   SCIENCE

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Functional traits and environmental filtering drive community assembly in a species-rich tropical system

(2010) Edwin Lebrija-Trejos et al.   ECOLOGY

Tradeoffs between nitrogen- and water-use efficiency in dominant species of the semiarid steppe of Inner Mongolia

(2010) Xiao Ying Gong et al.   PLANT AND SOIL

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Is There a Latitudinal Gradient in the Importance of Biotic Interactions?

(2009) Douglas W. Schemske et al.   Annual Review of Ecology Evolution and Systematics

Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil

(2009) J.C. Aciego Pietri et al.   SOIL BIOLOGY & BIOCHEMISTRY

Variation in the active diazotrophic community in rice paddy—nifH PCR-DGGE analysis of rhizosphere and bulk soil

(2008) Ingvild Wartiainen et al.   APPLIED SOIL ECOLOGY

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

(2008) Jonathan B. Losos   ECOLOGY LETTERS

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils

(2007) S.A. Wakelin et al.   SOIL BIOLOGY & BIOCHEMISTRY