Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition

Diversity and dynamics of the microbial community on decomposing wheat straw during mushroom compost production

(2014) Xi Zhang et al.   BIORESOURCE TECHNOLOGY

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community

(2014) John M Gladden et al.   Biotechnology for Biofuels

Production, purification and characterization of a novel GH 12 family endoglucanase from Aspergillus terreus and its application in enzymatic degradation of delignified rice straw

(2014) Madhuri Narra et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

New insights into the structure and dynamics of actinomycetal community during manure composting

(2013) Cheng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metagenomic species profiling using universal phylogenetic marker genes

(2013) Shinichi Sunagawa et al.   NATURE METHODS

Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms

(2013) Layla Farage Martins et al.   PLoS One

Metagenomic Insights into Metabolic Capacities of the Gut Microbiota in a Fungus-Cultivating Termite (Odontotermes yunnanensis)

(2013) Ning Liu et al.   PLoS One

Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses

(2013) Amitha P. Reddy et al.   PLoS One

High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

(2013) Xiaoliang Cheng et al.   Frontiers in Microbiology

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

(2012) Andre Schuster et al.   Biotechnology for Biofuels

Glycoside Hydrolases from a targeted Compost Metagenome, activity-screening and functional characterization

(2012) Michael J Dougherty et al.   BMC BIOTECHNOLOGY

Structure, fluctuation and magnitude of a natural grassland soil metagenome

(2012) Tom O Delmont et al.   ISME Journal

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Mesophilic and Thermophilic Conditions Select for Unique but Highly Parallel Microbial Communities to Perform Carboxylate Platform Biomass Conversion

(2012) Emily B. Hollister et al.   PLoS One

Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria

(2012) Iain Anderson et al.   PLoS One

Functional diversity within the simple gut microbiota of the honey bee

(2012) P. Engel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and Characterization of CcAbf62A, a GH62 α-L-Arabinofuranosidase, from the BasidiomyceteCoprinopsis cinerea

(2011) Kohsuke HASHIMOTO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis

(2011) J. L. A. Bras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of cellulose metabolism by the giant panda gut microbiome

(2011) L. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment

(2011) Joel E. Graham et al.   Nature Communications

Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

(2010) Kristen M. DeAngelis et al.   BioEnergy Research

Characterization of thermostable cellulases produced by Bacillus and Geobacillus strains

(2010) Gurdeep Rastogi et al.   BIORESOURCE TECHNOLOGY

The emerging role for bacteria in lignin degradation and bio-product formation

(2010) Timothy DH Bugg et al.   CURRENT OPINION IN BIOTECHNOLOGY

Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system

(2010) Sarunyou Wongwilaiwalin et al.   ENZYME AND MICROBIAL TECHNOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community

(2010) Martin Allgaier et al.   PLoS One

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete genome sequence of Stackebrandtia 
nassauensis type strain (LLR-40K-21T)

(2010) Chris Munk et al.   Standards in Genomic Sciences

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and activity of enriched ruminal cultures of anaerobic fungi and methanogens grown together on lignocellulose in consecutive batch culture

(2009) Yan Fen Cheng et al.   BIORESOURCE TECHNOLOGY

Plant biomass degradation by gut microbiomes: more of the same or something new?

(2009) Mark Morrison et al.   CURRENT OPINION IN BIOTECHNOLOGY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Methods for Pretreatment of Lignocellulosic Biomass for Efficient Hydrolysis and Biofuel Production

(2009) Parveen Kumar et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ins and Outs of Major Facilitator Superfamily Antiporters

(2008) Christopher J. Law et al.   Annual Review of Microbiology

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Pectin structure and biosynthesis

(2008) D MOHNEN   CURRENT OPINION IN PLANT BIOLOGY

LysM, a widely distributed protein motif for binding to (peptido)glycans

(2008) Girbe Buist et al.   MOLECULAR MICROBIOLOGY

How biotech can transform biofuels

(2008) Lee R Lynd et al.   NATURE BIOTECHNOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH