Discovering naturally-occurring microbiota in disease suppressive soil: Potential role of biological elements in suppressing Ganoderma boninense

Current strategies and perspectives in detection and control of basal stem rot of oil palm

(2021) Yasmeen Siddiqui et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Micronutrients and Soil Microorganisms in the Suppression of Potato Common Scab

(2021) Jan Kopecky et al.   Agronomy-Basel

Simultaneous Removal of Dissolved Methane and Nitrogen from Synthetic Mainstream Anaerobic Effluent

(2020) Tao Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mining the Yucatan Coastal Microbiome for the Identification of Non-Ribosomal Peptides Synthetase (NRPS) Genes

(2020) Mario Alberto Martínez-Núñez et al.   Toxins

Effects of inorganic and organic treatments on the microbial community of maize rhizosphere by a shotgun metagenomics approach

(2020) Matthew Chekwube Enebe et al.   ANNALS OF MICROBIOLOGY

Increasing temperature can modify the effect of straw mulching on soil C fractions, soil respiration, and microbial community composition

(2020) Xin Fu et al.   PLoS One

Determining Soil Microbial Communities and Their Influence on Ganoderma Disease Incidences in Oil Palm (Elaeis guineensis) via High-Throughput Sequencing

(2020) Yit Kheng Goh et al.   Biology-Basel

Ganoderma boninense disease deduced from simulation modelling with large data sets of future Malaysian oil palm climate

(2019) R. R. M. Paterson   PHYTOPARASITICA

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Comammox Nitrospira play an active role in nitrification of agricultural soils amended with nitrogen fertilizers

(2019) Chaoyu Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deciphering Underlying Drivers of Disease Suppressiveness Against Pathogenic Fusarium oxysporum

(2019) Yannan Ou et al.   Frontiers in Microbiology

Effect of Sterilization on Arbuscular Mycorrhizal Fungal Activity and Soil Nutrient Status

(2019) Wentao Hu et al.  

Plant-Parasitic Nematodes and Food Security in Sub-Saharan Africa

(2018) Danny L. Coyne et al.   Annual Review of Phytopathology

Impacts of soil abiotic attributes on Fusarium wilt, focusing on bananas

(2018) Ryan Orr et al.   APPLIED SOIL ECOLOGY

Conventional farming impairs Rhizoctonia solani disease suppression by disrupting soil food web

(2018) Giuliano Bonanomi et al.   JOURNAL OF PHYTOPATHOLOGY

Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino

(2018) P. E. Courty et al.   MYCORRHIZA

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis

(2018) Alexander Crits-Christoph et al.   NATURE

Soil Microbiomes Associated with Verticillium Wilt-Suppressive Broccoli and Chitin Amendments are Enriched with Potential Biocontrol Agents

(2018) Patrik Inderbitzin et al.   PHYTOPATHOLOGY

Root microbiota shift in rice correlates with resident time in the field and developmental stage

(2018) Jingying Zhang et al.   Science China-Life Sciences

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Microbial Community Composition in Take-All Suppressive Soils

(2018) Paola Durán et al.   Frontiers in Microbiology

Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management

(2018) Muhammad Zarul Hanifah Md Zoqratt et al.   PeerJ

Biopolymer (Chitin) from Various Marine Seashell Wastes: Isolation and Characterization

(2017) Ernestine Alabaraoye et al.   JOURNAL OF POLYMERS AND THE ENVIRONMENT

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease

(2017) Hongwu Yang et al.   Frontiers in Microbiology

Microbial Degradation of Lobster Shells to Extract Chitin Derivatives for Plant Disease Management

(2017) Gayathri Ilangumaran et al.   Frontiers in Microbiology

The occurrence of pathogen suppressive soils in Sweden in relation to soil biota, soil properties, and farming practices

(2016) Michael T. Löbmann et al.   APPLIED SOIL ECOLOGY

Acidobacteria strains from subdivision 1 act as plant growth-promoting bacteria

(2016) Anna M. Kielak et al.   ARCHIVES OF MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

(2016) Louie Wurch et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Manipulating the banana rhizosphere microbiome for biological control of Panama disease

(2015) Chao Xue et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Arbuscular mycorrhizal symbiosis alters stomatal conductance of host plants more under drought than under amply watered conditions: a meta-analysis

(2014) Robert M. Augé et al.   MYCORRHIZA

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

A Review of the Applications of Chitin and Its Derivatives in Agriculture to Modify Plant-Microbial Interactions and Improve Crop Yields

(2013) Russell Sharp   Agronomy-Basel

Suppressive Composts: Microbial Ecology Links Between Abiotic Environments and Healthy Plants

(2012) Yitzhak Hadar et al.   Annual Review of Phytopathology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Effect of Trichoderma asperellum and arbuscular mycorrhizal fungi on cacao growth and resistance against black pod disease

(2011) S.N. Tchameni et al.   CROP PROTECTION

Polyketide synthase pathways identified from a metagenomic library are derived from soil Acidobacteria

(2011) Larissa C. Parsley et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

(2011) Noah Rosenzweig et al.   PLANT DISEASE

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Rhizosphere bacterial communities associated with disease suppressiveness stages of take-all decline in wheat monoculture

(2009) H. Sanguin et al.   NEW PHYTOLOGIST

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Role of tardigrades in the suppressive service of a soil food web

(2007) Sara Sánchez-Moreno et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Extraction and characterization of chitin and chitosan from local sources

(2007) Entsar S. Abdou et al.   BIORESOURCE TECHNOLOGY