Determining Soil Microbial Communities and Their Influence on Ganoderma Disease Incidences in Oil Palm (Elaeis guineensis) via High-Throughput Sequencing

Research Advances of Beneficial Microbiota Associated with Crop Plants

(2020) Lei Tian et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations

(2019) Garvin Schulz et al.   Frontiers in Microbiology

Effects of microbial inoculants on phosphorus and potassium availability, bacterial community composition, and chili pepper growth in a calcareous soil: a greenhouse study

(2019) Yingnan Zhao et al.   JOURNAL OF SOILS AND SEDIMENTS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Soil Depth Determines the Composition and Diversity of Bacterial and Archaeal Communities in a Poplar Plantation

(2019) Huili Feng et al.   Forests

PROSPECTS IN SUSTAINABLE CONTROL OF OIL PALM PESTS AND DISEASES THROUGH THE ENHANCEMENT OF ECOSYSTEM SERVICES – THE WAY FORWARD

(2019) NORMAN KAMARUDIN   Journal of Oil Palm Research

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Approaches for the discrimination of suppressive soils for Pythium irregulare disease

(2019) Margarita Ros et al.   APPLIED SOIL ECOLOGY

Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab

(2019) Jan Kopecky et al.   Scientific Reports

Current Status and Potential Applications of Underexplored Prokaryotes

(2019) Kian Mau Goh et al.   Microorganisms

Ganoderma infection of oil palm – a persistent problem in Papua New Guinea and Solomon Islands

(2019) E. A. Gorea et al.   AUSTRALASIAN PLANT PATHOLOGY

Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

(2018) Nanna B Svenningsen et al.   ISME Journal

OIL PALM ECONOMIC PERFORMANCE IN MALAYSIA AND R&D PROGRESS IN 2017 – Review Article

(2018) KUSHAIRI A   Journal of Oil Palm Research

Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino

(2018) P. E. Courty et al.   MYCORRHIZA

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis

(2018) Alexander Crits-Christoph et al.   NATURE

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region

(2018) Katarzyna Siegel-Hertz et al.   Frontiers in Microbiology

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Assessment of Microbial Community Dynamics in River Bank Filtrate Using High-Throughput Sequencing and Flow Cytometry

(2018) Christina J. Fiedler et al.   Frontiers in Microbiology

Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management

(2018) Muhammad Zarul Hanifah Md Zoqratt et al.   PeerJ

Yield gaps in oil palm: A quantitative review of contributing factors

(2017) Lotte S. Woittiez et al.   EUROPEAN JOURNAL OF AGRONOMY

Prokaryotic Communities at Different Depths between Soils with and without Tomato Bacterial Wilt but Pathogen-Present in a Single Greenhouse

(2017) Chol Gyu Lee et al.   MICROBES AND ENVIRONMENTS

Comparison of Prokaryotic and Eukaryotic Communities in Soil Samples with and without Tomato Bacterial Wilt Collected from Different Fields

(2017) Chol Gyu Lee et al.   MICROBES AND ENVIRONMENTS

Impact of Land-use Change on Vertical Soil Bacterial Communities in Sabah

(2017) Hoe Seng Tin et al.   MICROBIAL ECOLOGY

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Consequences of tropical forest conversion to oil palm on soil bacterial community and network structure

(2017) Stephen A. Wood et al.   SOIL BIOLOGY & BIOCHEMISTRY

The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins

(2017) Ian P. G. Marshall et al.   Environmental Microbiology Reports

Soil Acidification Aggravates the Occurrence of Bacterial Wilt in South China

(2017) Shili Li et al.   Frontiers in Microbiology

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

(2017) Eric D. Becraft et al.   Frontiers in Microbiology

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

(2017) Sean P. Jungbluth et al.   Scientific Data

Microbial community composition is related to soil biological and chemical properties and bacterial wilt outbreak

(2017) Rui Wang et al.   Scientific Reports

The succession pattern of soil microbial communities and its relationship with tobacco bacterial wilt

(2016) Jiaojiao Niu et al.   BMC MICROBIOLOGY

The impact of tropical forest logging and oil palm agriculture on the soil microbiome

(2016) Binu M. Tripathi et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Soil Nutrient Status and Leaf Nutrient Norms in Oil Palm (Elaeis GuineensisJacq.) Plantations Grown in the West Coastal Area of India

(2015) S. K. Behera et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Ecological impacts of oil palm agriculture on forest mammals in plantation estates and smallholdings

(2014) Badrul Azhar et al.   BIODIVERSITY AND CONSERVATION

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

(2014) Congcong Shen et al.   ECOLOGY

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

Correction: A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2014) Linda A. Amaral-Zettler et al.   PLoS One

Protozoa Drive the Dynamics of Culturable Biocontrol Bacterial Communities

(2013) Maren Stella Müller et al.   PLoS One

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

(2013) Swee Hoe Ong et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

Detection and control of Ganoderma boninense: strategies and perspectives

(2013) Roozbeh Hushiarian et al.   SpringerPlus

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

(2011) Xueju Lin et al.   ENVIRONMENTAL MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

The anamorphic genus Calcarisporiella is a new member of the Mucoromycotina

(2011) Dai Hirose et al.   MYCOSCIENCE

Ganoderma boninense basidiospores in oil palm plantations: evaluation of their possible role in stem rots of Elaeis guineensis

(2011) R. W. Rees et al.   PLANT PATHOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Protozoan growth rates on secondary-metabolite-producing Pseudomonas spp. correlate with high-level protozoan taxonomy

(2010) Annette L. Pedersen et al.   FEMS MICROBIOLOGY LETTERS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interaction of bacteria-feeding soil flagellates and Pseudomonas spp.

(2009) Annette L. Pedersen et al.   BIOLOGY AND FERTILITY OF SOILS

Soil fungistasis and its relations to soil microbial composition and diversity: A case study of a series of soils with different fungistasis

(2008) Minna WU et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Factors Affecting Preference Responses of the Freshwater CiliateUronema nigricansto Bacterial Prey

(2008) BEGOÑA AYO et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Bacterial Feeders, the Nematode Caenorhabditis elegans and the Flagellate Cercomonas longicauda, have different Effects on Outcome of Competition among the Pseudomonas Biocontrol Strains CHA0 and DSS73

(2008) Annette L. Pedersen et al.   MICROBIAL ECOLOGY