Fungal Endophytic Community and Diversity Associated with Desert Shrubs Driven by Plant Identity and Organ Differentiation in Extremely Arid Desert Ecosystem

Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root

(2021) Ahmed Abdelfattah et al.   ENVIRONMENTAL MICROBIOLOGY

Desert-adapted fungal endophytes induce salinity and drought stress resistance in model crops

(2021) Mahdieh S. Hosseyni Moghaddam et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding

(2021) Graciéle Cunha Alves de Menezes et al.   EXTREMOPHILES

Fungal diversity and functionality are driven by soil texture in Taylor Valley, Antarctica

(2021) F. Canini et al.   Fungal Ecology

Why Plants Harbor Complex Endophytic Fungal Communities: Insights From Perennial Bunchgrass Stipagrostis sabulicola in the Namib Sand Sea

(2021) Anthony J. Wenndt et al.   Frontiers in Microbiology

Long term effects of management practice intensification on soil microbial community structure and co-occurrence network in a non-timber plantation

(2020) Liang Xue et al.   FOREST ECOLOGY AND MANAGEMENT

Entomopathogenic effect of Trichothecium roseum (Pers.) Link (Hypocreales: Ascomycota) against Pauropsylla buxtoni (Psylloidea: Hemiptera) infesting Ficus carica leaves and its potential use as biocontrol agent of the insect

(2020) Y. Batta   JOURNAL OF APPLIED MICROBIOLOGY

Diversity and community of culturable endophytic fungi from stems and roots of desert halophytes in northwest China

(2020) Jia-Long Li et al.   MycoKeys

Virulence of Metarhizium brunneum (Ascomycota: Hypocreales) Strains Against Stinkbugs Euschistus heros and Dichelops furcatus (Hemiptera: Pentatomidae)

(2020) G Resquín-Romero et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Exposure Timing and Method Affect Beauveria bassiana (Hypocreales: Cordycipitaceae) Efficacy Against House Fly (Diptera: Muscidae) Larvae

(2020) Roxie L White et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

(2020) Tomáš Větrovský et al.   Scientific Data

Keratinophilic fungi: Specialized fungal communities in a desert ecosystem identified using cultured-based and Illumina sequencing approaches

(2020) Paris S. Hamm et al.   MICROBIOLOGICAL RESEARCH

Host selection shapes crop microbiome assembly and network complexity

(2020) Chao Xiong et al.   NEW PHYTOLOGIST

Colonization by dark septate endophytes improves the growth of Hedysarum scoparium under multiple inoculum levels

(2020) Yiling Zuo et al.   SYMBIOSIS

Characterization of soil microbes associated with a grazing‐tolerant grass species, Stipa breviflora , in the Inner Mongolian desert steppe

(2020) Lingling Chen et al.   Ecology and Evolution

Temporal and spatial variation of arbuscular mycorrhizal fungi under the canopy of Hedysarum scoparium in the northern desert, China

(2019) Wei Qiang et al.   APPLIED SOIL ECOLOGY

Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland

(2019) Hirokazu Toju et al.   Frontiers in Microbiology

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Dark septate endophytes improve the growth of host and non-host plants under drought stress through altered root development

(2019) Xia Li et al.   PLANT AND SOIL

Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere

(2019) Xin Qian et al.   Frontiers in Microbiology

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

(2019) Hui Yao et al.   Microbiome

Species composition and colonization of dark septate endophytes are affected by host plant species and soil depth in the Mu Us sandland, northwest China

(2019) Lifeng Hou et al.   Fungal Ecology

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

(2019) Juan E. Pérez-Jaramillo et al.   Microbiome

Soil-plant compartments affect fungal microbiome diversity and composition in grapevine

(2019) María del Pilar Martínez-Diz et al.   Fungal Ecology

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence

(2018) Francesca Mapelli et al.   ISME Journal

Occurrence pattern of the parasitic fungus Rhytisma polare (Ascomycota) on the polar willow (Salix polaris) under limited water conditions in a high-Arctic semi-desert

(2018) Shota Masumoto et al.   POLAR BIOLOGY

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

(2018) Dinka Mandakovic et al.   Scientific Reports

Fungal endophytes from arid areas of Andalusia: high potential sources for antifungal and antitumoral agents

(2018) Victor González-Menéndez et al.   Scientific Reports

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Fungi stabilize connectivity in the lung and skin microbial ecosystems

(2018) Laura Tipton et al.   Microbiome

Linking microbial co-occurrences to soil ecological processes across a woodland-grassland ecotone

(2018) Samiran Banerjee et al.   Ecology and Evolution

A Comparative Study of Fungal Community Structure, Diversity and Richness between the Soil and the Phyllosphere of Native Grass Species in a Copper Tailings Dam in Shanxi Province, China

(2018) Tong Jia et al.   Applied Sciences-Basel

Revegetated shrub species recruit different soil fungal assemblages in a desert ecosystem

(2018) Yanfei Sun et al.   PLANT AND SOIL

Microbial diversity and ecological networks as indicators of environmental quality

(2017) Battle Karimi et al.   Environmental Chemistry Letters

Spatial dynamics of dark septate endophytes in the roots and rhizospheres of Hedysarum scoparium in northwest China and the influence of edaphic variables

(2017) Linlin Xie et al.   Fungal Ecology

Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site

(2017) Alexis Durand et al.   MICROBIAL ECOLOGY

Host Specificity of Endophytic Mycobiota of Wild Nicotiana Plants from Arid Regions of Northern Australia

(2017) Khondoker M. G. Dastogeer et al.   MICROBIAL ECOLOGY

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Differences in water-use strategies along an aridity gradient between two coexisting desert shrubs (Reaumuria soongorica and Nitraria sphaerocarpa): isotopic approaches with physiological evidence

(2017) Cicheng Zhang et al.   PLANT AND SOIL

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thermotolerance of fungal endophytes isolated from plants adapted to the Thar Desert, India

(2017) M. B. Sangamesh et al.   SYMBIOSIS

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

(2017) Bram Beckers et al.   Microbiome

Structure, Variation, and Co-occurrence of Soil Microbial Communities in Abandoned Sites of a Rare Earth Elements Mine

(2016) Yuanqing Chao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees

(2016) J. B. Vincent et al.   MOLECULAR ECOLOGY

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons

(2016) Hirokazu Toju et al.   PLoS One

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Soil-foraging animals alter the composition and co-occurrence of microbial communities in a desert shrubland

(2015) David J Eldridge et al.   ISME Journal

Fungal Endophytes in Aboveground Tissues of Desert Plants: Infrequent in Culture, but Highly Diverse and Distinctive Symbionts

(2015) Nicholas C. Massimo et al.   MICROBIAL ECOLOGY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Dark septate endophytic pleosporalean genera from semiarid areas

(2015) D.G. Knapp et al.   PERSOONIA

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Griseofulvin-producing Xylaria endophytes of Pinus strobus and Vaccinium angustifolium: evidence for a conifer-understory species endophyte ecology

(2014) Susan N. Richardson et al.   Fungal Ecology

Fungal Endophytes of Aquatic Macrophytes: Diverse Host-Generalists Characterized by Tissue Preferences and Geographic Structure

(2014) Dustin C. Sandberg et al.   MICROBIAL ECOLOGY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica

(2014) Mariana Del Olmo-Ruiz et al.   MYCOLOGIA

Plant functional traits and phylogenetic relatedness explain variation in associations with root fungal endophytes in an extreme arid environment

(2014) Mónica A. Lugo et al.   MYCORRHIZA

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Factors influencing communities of foliar fungal endophytes in riparian woody plants

(2013) Matthew K. Lau et al.   Fungal Ecology

Species and organ specificity of fungal endophytes in herbaceous grassland plants

(2013) James A. Wearn et al.   JOURNAL OF ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

(2013) Hirokazu Toju et al.   PLoS One

Correction: Transcriptomic Analysis of a Tertiary Relict Plant, Extreme Xerophyte Reaumuria soongorica to Identify Genes Related to Drought Adaptation

(2013) Yong Shi et al.   PLoS One

Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture

(2013) Lihua Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Geographic and Tissue Influences on Endophytic Fungal Communities of Taxus chinensis var. mairei in China

(2012) Lingshang Wu et al.   CURRENT MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Foliar nutrients shape fungal endophyte communities in Western white pine (Pinus monticola) with implications for white-tailed deer herbivory

(2012) Beau G. Larkin et al.   Fungal Ecology

Diversity and composition of fungal endophytes in semiarid Northwest Venezuela

(2012) M. Loro et al.   JOURNAL OF ARID ENVIRONMENTS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Biodiversity, evolution and adaptation of fungi in extreme environments

(2012) Laura Selbmann et al.   PLANT BIOSYSTEMS

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Pleosporales

(2011) Ying Zhang et al.   FUNGAL DIVERSITY

Endophytic fungal community in stems and leaves of plants from desert areas in China

(2011) Yue Sun et al.   MYCOLOGICAL PROGRESS

Diversity and antimicrobial activity of endophytic fungi isolated from Nyctanthes arbor-tristis, a well-known medicinal plant of India

(2011) Surendra K. Gond et al.   MYCOSCIENCE

Diplomitoporus rimosus is found in Asia and belongs to the Hymenochaetales

(2010) Masoomeh Ghobad-Nejhad et al.   MYCOLOGIA

Insidious effects of sequencing errors on perceived diversity in molecular surveys

(2010) Ian A. Dickie   NEW PHYTOLOGIST

Shrubs influence arbuscular mycorrhizal fungi communities in a semi-arid environment

(2010) Laura B. Martínez-García et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Novel Root Fungal Consortium Associated with a Dominant Desert Grass

(2008) A. Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microfungal “Weeds” in the Leafcutter Ant Symbiosis

(2008) A. Rodrigues et al.   MICROBIAL ECOLOGY

Neighboring trees affect ectomycorrhizal fungal community composition in a woodland-forest ecotone

(2008) Nathaniel A. Hubert et al.   MYCORRHIZA