Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome

(2017) Julia W. Neilson et al.   mSystems

Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability

(2016) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Nitrogen cycling in an extreme hyperarid environment inferred from δ15N analyses of plants, soils and herbivore diet

(2016) Francisca P. Díaz et al.   Scientific Reports

How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

(2016) Sonia Kéfi et al.   PLOS BIOLOGY

Topological distortion and reorganized modular structure of gut microbial co-occurrence networks in inflammatory bowel disease

(2016) Steven N. Baldassano et al.   Scientific Reports

L-GRAAL: Lagrangian graphlet-based network aligner

(2015) Noël Malod-Dognin et al.   BIOINFORMATICS

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

(2014) K. S. Ramirez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community

(2013) Yuan-Ming Zheng et al.   PLoS One

Iron, copper, zinc, and manganese transport and regulation in pathogenic Enterobacteria: correlations between strains, site of infection and the relative importance of the different metal transport systems for virulence

(2013) Gaëlle Porcheron et al.   Frontiers in Cellular and Infection Microbiology

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile

(2012) Julia W. Neilson et al.   EXTREMOPHILES

Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley

(2012) Francesca Stomeo et al.   FEMS MICROBIOLOGY ECOLOGY

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Comparative physiology: a “crystal ball” for predicting consequences of global change

(2011) George N. Somero   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

The ecological and evolutionary implications of merging different types of networks

(2011) Colin Fontaine et al.   ECOLOGY LETTERS

Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats

(2011) Stefanie Handl et al.   FEMS MICROBIOLOGY ECOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeography of soil archaea and bacteria along a steep precipitation gradient

(2009) Roey Angel et al.   ISME Journal

What is microbial community ecology?

(2009) Allan Konopka   ISME Journal

Global Bathymetry and Elevation Data at 30 Arc Seconds Resolution: SRTM30_PLUS

(2009) J. J. Becker et al.   MARINE GEODESY

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

An examination of the bacteriophages and bacteria of the Namib desert

(2008) Eric Prestel et al.   JOURNAL OF MICROBIOLOGY