Microbial diversity and ecological networks as indicators of environmental quality

Soil C and N models that integrate microbial diversity

(2016) Benjamin P. Louis et al.   Environmental Chemistry Letters

Air pollution below WHO levels decreases by 40 % the links of terrestrial microbial networks

(2016) Battle Karimi et al.   Environmental Chemistry Letters

Molecular microbiology methods for environmental diagnosis

(2016) T. Bouchez et al.   Environmental Chemistry Letters

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Microbial Diversity Indexes Can Explain Soil Carbon Dynamics as a Function of Carbon Source

(2016) Benjamin P. Louis et al.   PLoS One

The dynamics of soil micro-food web structure and functions vary according to litter quality

(2016) Marie Sauvadet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton

(2016) Mathias Milici et al.   Frontiers in Microbiology

Resistant Microbial Cooccurrence Patterns Inferred by Network Topology

(2015) Sari Peura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Management of tomato diseases caused by Fusarium oxysporum

(2015) R.J. McGovern   CROP PROTECTION

Levels and limits in artificial selection of communities

(2015) Manuel Blouin et al.   ECOLOGY LETTERS

Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis

(2015) Mathieu Cusson et al.   JOURNAL OF SEA RESEARCH

Correction for Zelezniak et al., Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and complexity of microbial communities from a chlor-alkali tailings dump

(2015) Cyril Zappelini et al.   SOIL BIOLOGY & BIOCHEMISTRY

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Mapping and determinism of soil microbial community distribution across an agricultural landscape

(2015) Florentin Constancias et al.   MicrobiologyOpen

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

(2015) Vincent Tardy et al.   PLoS One

Beyond species loss: the extinction of ecological interactions in a changing world

(2014) Alfonso Valiente-Banuet et al.   FUNCTIONAL ECOLOGY

The more, the merrier: heterotroph richness stimulates methanotrophic activity

(2014) Adrian Ho et al.   ISME Journal

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Land-use and management practices affect soil ammonia oxidiser community structure, activity and connectedness

(2014) Andrew Bissett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example

(2014) Wilfred F. M. Röling et al.   Frontiers in Microbiology

Collective decision-making in microbes

(2014) Adin Ross-Gillespie et al.   Frontiers in Microbiology

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland

(2013) Pascal Lienhard et al.   Agronomy for Sustainable Development

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

To What Extent Do Food Preferences Explain the Trophic Position of Heterotrophic and Mixotrophic Microbial Consumers in a Sphagnum Peatland?

(2013) Vincent E. J. Jassey et al.   MICROBIAL ECOLOGY

Anthropogenic perturbation of the carbon fluxes from land to ocean

(2013) Pierre Regnier et al.   Nature Geoscience

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Microbial Diversity and Structure Are Drivers of the Biological Barrier Effect against Listeria monocytogenes in Soil

(2013) Anne-Laure Vivant et al.   PLoS One

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability of soil microbial structure and activity depends on microbial diversity

(2013) Vincent Tardy et al.   Environmental Microbiology Reports

Impact of microbial diversity depletion on xenobiotic degradation by sewage-activated sludge

(2013) Guillermina Hernandez-Raquet et al.   Environmental Microbiology Reports

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Soil microbial diversity affects soil organic matter decomposition in a silty grassland soil

(2012) Karen Baumann et al.   BIOGEOCHEMISTRY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Co-Occurrence Patterns of Plants and Soil Bacteria in the High-Alpine Subnival Zone Track Environmental Harshness

(2012) Andrew J. King et al.   Frontiers in Microbiology

The generation and maintenance of diversity in microbial communities

(2011) Noah Fierer et al.   AMERICAN JOURNAL OF BOTANY

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

(2011) Li C Xia et al.   BMC Systems Biology

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Null model analysis of species associations using abundance data

(2010) Werner Ulrich et al.   ECOLOGY

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

(2010) U. N. Nielsen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

The large-scale organization of the bacterial network of ecological co-occurrence interactions

(2010) Shiri Freilich et al.   NUCLEIC ACIDS RESEARCH

Conservation of species interaction networks

(2009) Jason M. Tylianakis et al.   BIOLOGICAL CONSERVATION

Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development

(2009) Karl Ritz et al.   ECOLOGICAL INDICATORS

Anthropogenic disturbance affects the structure of bacterial communities

(2009) Duane Ager et al.   ENVIRONMENTAL MICROBIOLOGY

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Predators promote defence of rhizosphere bacterial populations by selective feeding on non-toxic cheaters

(2009) Alexandre Jousset et al.   ISME Journal

The empirical Bayes approach as a tool to identify non-random species associations

(2009) Nicholas J. Gotelli et al.   OECOLOGIA

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

A Two-Stage Probabilistic Approach to Multiple-Community Similarity Indices

(2008) Anne Chao et al.   BIOMETRICS

The signature of phylogenetic constraints on food-web structure

(2008) Louis-Félix Bersier et al.   Ecological Complexity

Positive interactions among competitors can produce species-rich communities

(2008) Kevin Gross   ECOLOGY LETTERS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS