Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera)

(2018) Asha J. Dissanayake et al.   FUNGAL DIVERSITY

Endophytic and Epiphytic Phyllosphere Fungal Communities Are Shaped by Different Environmental Factors in a Mediterranean Ecosystem

(2018) Teresa Gomes et al.   MICROBIAL ECOLOGY

Transient leaf endophytes are the most active fungi in 1-year-old beech leaf litter

(2017) Marco Alexandre Guerreiro et al.   FUNGAL DIVERSITY

Phylogenetic relatedness explains highly interconnected and nested symbiotic networks of woody plants and arbuscular mycorrhizal fungi in a Chinese subtropical forest

(2017) Liang Chen et al.   MOLECULAR ECOLOGY

Host preference and network properties in biotrophic plant-fungal associations

(2017) Sergei Põlme et al.   NEW PHYTOLOGIST

Yamadazyma endophytica f.a. sp. nov., an ascomycetous yeast species isolated from leaf tissue

(2016) Pannida Khunnamwong et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees

(2016) J. B. Vincent et al.   MOLECULAR ECOLOGY

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

(2015) Kabir G. Peay et al.   ECOLOGY LETTERS

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea

(2015) Rachael Martin et al.   MYCOLOGIA

Mycorrhizal networks and coexistence in species-rich orchid communities

(2015) Hans Jacquemyn et al.   NEW PHYTOLOGIST

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

(2015) Pierre-Luc Chagnon et al.   OECOLOGIA

Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology

(2015) H. Toju et al.   Science Advances

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

In the forest vine Smilax rotundifolia, fungal epiphytes show site-wide spatial correlation, while endophytes show evidence of niche partitioning

(2014) Christopher B. Zambell et al.   FUNGAL DIVERSITY

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

Assembly of complex plant–fungus networks

(2014) Hirokazu Toju et al.   Nature Communications

MODULAR: software for the autonomous computation of modularity in large network sets

(2013) Flavia Maria Darcie Marquitti et al.   ECOGRAPHY

Factors shaping community structure of endophytic fungi–evidence from the Pinus-Viscum-system

(2013) Derek Peršoh   FUNGAL DIVERSITY

Factors influencing communities of foliar fungal endophytes in riparian woody plants

(2013) Matthew K. Lau et al.   Fungal Ecology

Network perspectives of ectomycorrhizal associations

(2013) Mohammad Bahram et al.   Fungal Ecology

Species and organ specificity of fungal endophytes in herbaceous grassland plants

(2013) James A. Wearn et al.   JOURNAL OF ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Comparison of the diversity, composition, and host recurrence of xylariaceous endophytes in subtropical, cool temperate, and subboreal regions in Japan

(2013) Anzu Ikeda et al.   POPULATION ECOLOGY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Annuality of Central European deciduous tree leaves delimits community development of epifoliar pigmented fungi

(2012) Fabienne Flessa et al.   Fungal Ecology

Foliar nutrients shape fungal endophyte communities in Western white pine (Pinus monticola) with implications for white-tailed deer herbivory

(2012) Beau G. Larkin et al.   Fungal Ecology

Community structure and preference of endophytic fungi of three woody plants in a mixed forest

(2012) X. Sun et al.   Fungal Ecology

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids

(2012) FLORENT MARTOS et al.   MOLECULAR ECOLOGY

The network structure of plant-arbuscular mycorrhizal fungi

(2012) A. Montesinos-Navarro et al.   NEW PHYTOLOGIST

Plant facilitation occurs between species differing in their associated arbuscular mycorrhizal fungi

(2012) A. Montesinos-Navarro et al.   NEW PHYTOLOGIST

Using ecological network theory to evaluate the causes and consequences of arbuscular mycorrhizal community structure

(2012) Pierre-Luc Chagnon et al.   NEW PHYTOLOGIST

Compartmentalization increases food-web persistence

(2011) Daniel B. Stouffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A straightforward computational approach for measuring nestedness using quantitative matrices

(2010) Mário Almeida-Neto et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Effects of fungal endophytes on grass and non-grass litter decomposition rates

(2010) Witoon Purahong et al.   FUNGAL DIVERSITY

Community composition of endophytic fungi in Acer truncatum and their role in decomposition

(2010) Xiang Sun et al.   FUNGAL DIVERSITY

Status and distribution of mangrove forests of the world using earth observation satellite data

(2010) C. Giri et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal-Fungal Associations Affect the Assembly of Endophyte Communities in Maize (Zea mays)

(2009) Jean J. Pan et al.   MICROBIAL ECOLOGY

The architecture of mutualistic networks minimizes competition and increases biodiversity

(2009) Ugo Bastolla et al.   NATURE

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Endophyte symbiosis benefits a rare grass under low water availability

(2008) S. Kannadan et al.   FUNCTIONAL ECOLOGY

A consumer's guide to nestedness analysis

(2008) Werner Ulrich et al.   OIKOS