Satellitome Analysis of the Pacific Oyster Crassostrea gigas Reveals New Pattern of Satellite DNA Organization, Highly Scattered across the Genome

The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA

(2021) Ljudevit Luka Boštjančić et al.   Frontiers in Genetics

Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome

(2021) Mariela Sader et al.   PLANTA

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

(2021) Carolina Peñaloza et al.   GigaScience

Decoding the Role of Satellite DNA in Genome Architecture and Plasticity—An Evolutionary and Clinical Affair

(2020) Sandra Louzada et al.   Genes

Sequence Composition Underlying Centromeric and Heterochromatic Genome Compartments of the Pacific Oyster Crassostrea gigas

(2020) Monika Tunjić Cvitanić et al.   Genes

Evolutionary history of alpha satellite DNA repeats dispersed within human genome euchromatin

(2020) Isidoro Feliciello et al.   Genome Biology and Evolution

Satellite DNA-like repeats are dispersed throughout the genome of the Pacific oyster Crassostrea gigas carried by Helentron non-autonomous mobile elements

(2020) Tanja Vojvoda Zeljko et al.   Scientific Reports

Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats

(2020) Octavio M. Palacios-Gimenez et al.   BMC BIOLOGY

Centromere Repeats: Hidden Gems of the Genome

(2019) Gabrielle Hartley et al.   Genes

Natural History of a Satellite DNA Family: From the Ancestral Genome Component to Species-Specific Sequences, Concerted and Non-Concerted Evolution

(2019) Alexander Belyayev et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Satellitome landscape analysis of Megaleporinus macrocephalus (Teleostei, Anostomidae) reveals intense accumulation of satellite sequences on the heteromorphic sex chromosome

(2019) Ricardo Utsunomia et al.   Scientific Reports

Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats

(2019) Tihana Vondrak et al.   PLANT JOURNAL

Molluscan genomics: the road so far and the way forward

(2019) André Gomes-dos-Santos et al.   HYDROBIOLOGIA

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

(2019) Ole K Tørresen et al.   NUCLEIC ACIDS RESEARCH

Nanopore Sequencing and De Novo Assembly of a Black-Shelled Pacific Oyster (Crassostrea gigas) Genome

(2019) Xiaotong Wang et al.   Frontiers in Genetics

Conversion of DNA Sequences: From a Transposable Element to a Tandem Repeat or to a Gene

(2019) Ana Paço et al.   Genes

Piercing the dark matter: bioinformatics of long-range sequencing and mapping

(2018) Fritz J. Sedlazeck et al.   NATURE REVIEWS GENETICS

The Third Revolution in Sequencing Technology

(2018) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Characteristics and evolution of satellite DNA sequences in bivalve mollusks

(2018) E. Šatović et al.   European Zoological Journal

Bivalve Impacts in Freshwater and Marine Ecosystems

(2018) Caryn C. Vaughn et al.   Annual Review of Ecology Evolution and Systematics

From the raw bar to the bench: Bivalves as models for human health

(2018) José A. Fernández Robledo et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum)

(2017) Seyoung Mun et al.   Genome Biology and Evolution

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

(2017) Petr Novák et al.   NUCLEIC ACIDS RESEARCH

Satellite DNA: An Evolving Topic

(2017) Manuel Garrido-Ramos   Genes

Comparative repeatome analysis on Triatoma infestans Andean and Non-Andean lineages, main vector of Chagas disease

(2017) Sebastián Pita et al.   PLoS One

High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis

(2017) Octavio Manuel Palacios-Gimenez et al.   Scientific Reports

Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

(2016) Eva Satović et al.   BMC GENOMICS

Rolling-circle amplification of centromericHelitronsin plant genomes

(2016) Wenwei Xiong et al.   PLANT JOURNAL

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

High-throughput analysis of the satellitome illuminates satellite DNA evolution

(2016) Francisco J. Ruiz-Ruano et al.   Scientific Reports

Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression

(2015) Guilherme B. Dias et al.   CHROMOSOME RESEARCH

Structural and functional liaisons between transposable elements and satellite DNAs

(2015) Nevenka Meštrović et al.   CHROMOSOME RESEARCH

terMITEs: miniature inverted-repeat transposable elements (MITEs) in the termite genome (Blattodea: Termitoidae)

(2015) Andrea Luchetti   MOLECULAR GENETICS AND GENOMICS

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

(2015) Jiří Macas et al.   PLoS One

Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis

(2014) Guilherme B. Dias et al.   Genome Biology and Evolution

Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA

(2014) Thibault Scalvenzi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel

(2014) Y. B. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons)

(2014) Jainy Thomas et al.   Mobile DNA

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Tandem Repeat-Containing MITEs in the Clam Donax trunculus

(2013) Eva Šatović et al.   Genome Biology and Evolution

Bivalve Omics: State of the Art and Potential Applications for the Biomonitoring of Harmful Marine Compounds

(2013) Victoria Suárez-Ulloa et al.   Marine Drugs

High-copy sequences reveal distinct evolution of the rye B chromosome

(2013) Sonja Klemme et al.   NEW PHYTOLOGIST

Nucleosomes and centromeric DNA packaging

(2013) J. S. Heslop-Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Satellite DNA-Like Elements Associated With Genes Within Euchromatin of the Beetle Tribolium castaneum

(2012) Josip Brajković et al.   G3-Genes Genomes Genetics

Cytogenetic characterization of the invasive mussel species Xenostrobus securis Lmk. (Bivalvia: Mytilidae)

(2011) Concepción Pérez-García et al.   GENOME

Characterization and Genomic Organization of PERI, a Repetitive DNA in the Drosophila buzzatii Cluster Related to DINE-1 Transposable Elements and Highly Abundant in the Sex Chromosomes

(2010) G.C.S. Kuhn et al.   CYTOGENETIC AND GENOME RESEARCH

Chromosomal organization of simple sequence repeats in the Pacific oyster (Crassostrea gigas): (GGAT)4, (GT)7 and (TA)10 chromosome patterns

(2008) K. Bouilly et al.   JOURNAL OF GENETICS

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

(2008) Hsiao-Pei Yang et al.   GENOME BIOLOGY

Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin

(2007) Miroslav Plohl et al.   GENE