Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats
出版年份 2020 全文链接
标题
Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats
作者
关键词
-
出版物
BMC BIOLOGY
Volume 18, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-12-21
DOI
10.1186/s12915-020-00925-x
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
- (2020) Octavio M Palacios-Gimenez et al. Genome Biology and Evolution
- Vertebrate Lineages Exhibit Diverse Patterns of Transposable Element Regulation and Expression across Tissues
- (2020) Giulia I M Pasquesi et al. Genome Biology and Evolution
- High dynamism for neo-sex chromosomes: satellite DNAs reveal complex evolution in a grasshopper
- (2020) Ana B. S. M. Ferretti et al. HEREDITY
- Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
- (2020) Valentina Peona et al. Molecular Ecology Resources
- Resolving the full spectrum of human genome variation using Linked-Reads
- (2019) Patrick Marks et al. GENOME RESEARCH
- Conservation, divergence and functions of centromeric satellite DNA families in the Bovidae
- (2019) A Escudeiro et al. Genome Biology and Evolution
- Genome Size Evolution: Small Transposons with Large Consequences
- (2019) Alexander Suh CURRENT BIOLOGY
- TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements
- (2019) Fabio CP Navarro et al. PLoS Computational Biology
- Massive gene amplification on a recently formed Drosophila Y chromosome
- (2019) Doris Bachtrog et al. Nature Ecology & Evolution
- FlexiDot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- (2018) Kathrin M Seibt et al. BIOINFORMATICS
- Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis
- (2018) Octavio M. Palacios-Gimenez et al. BMC EVOLUTIONARY BIOLOGY
- High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats
- (2018) Francisco J. Ruiz-Ruano et al. CHROMOSOMA
- Satellite DNA evolution: old ideas, new approaches
- (2018) Sarah Sander Lower et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- How complete are “complete” genome assemblies?-An avian perspective
- (2018) Valentina Peona et al. Molecular Ecology Resources
- Satellite DNAs Unveil Clues about the Ancestry and Composition of B Chromosomes in Three Grasshopper Species
- (2018) Diogo Milani et al. Genes
- FA-SAT Is an Old Satellite DNA Frozen in Several Bilateria Genomes
- (2017) Raquel Chaves et al. Genome Biology and Evolution
- Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster
- (2017) Daniel E. Khost et al. GENOME RESEARCH
- Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
- (2017) Alexander Suh et al. MOLECULAR ECOLOGY
- TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
- (2017) Petr Novák et al. NUCLEIC ACIDS RESEARCH
- Concerted evolution, a slow process for ant satellite DNA: study of the satellite DNA in the Aphaenogaster genus (Hymenoptera, Formicidae)
- (2017) P. Lorite et al. ORGANISMS DIVERSITY & EVOLUTION
- Y and W Chromosome Assemblies: Approaches and Discoveries
- (2017) Marta Tomaszkiewicz et al. TRENDS IN GENETICS
- Domestic chickens activate a piRNA defense against avian leukosis virus
- (2017) Yu Huining Sun et al. eLife
- Satellite DNA: An Evolving Topic
- (2017) Manuel Garrido-Ramos Genes
- Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness
- (2017) Michiru Nishita et al. Scientific Reports
- High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis
- (2017) Octavio Manuel Palacios-Gimenez et al. Scientific Reports
- Satellite DNA content illuminates the ancestry of a supernumerary (B) chromosome
- (2016) Francisco J. Ruiz-Ruano et al. CHROMOSOMA
- Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories
- (2016) Michael W. Vandewege et al. Genome Biology and Evolution
- OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
- (2016) Evgeny M. Zdobnov et al. NUCLEIC ACIDS RESEARCH
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- High-throughput analysis of the satellitome illuminates satellite DNA evolution
- (2016) Francisco J. Ruiz-Ruano et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- 300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling
- (2015) Hojun Song et al. CLADISTICS
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- ‘Satellite DNA transcripts have diverse biological roles in Drosophila’
- (2015) G C S Kuhn HEREDITY
- 1.688 g/cm3satellite-related repeats: a missing link to dosage compensation and speciation
- (2015) Miguel Gallach MOLECULAR ECOLOGY
- A novel satellite DNA isolated in Pecten jacobaeus shows high sequence similarity among molluscs
- (2015) Agnese Petraccioli et al. MOLECULAR GENETICS AND GENOMICS
- A piece of the pi(e): The diverse roles of animal piRNAs and their PIWI partners
- (2015) Robyn S.M. Lim et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
- (2015) Li Song et al. GigaScience
- Recurrent Turnover of Chromosome-Specific Satellites in Drosophila
- (2014) Miguel Gallach Genome Biology and Evolution
- Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres
- (2014) H. Zhang et al. PLANT CELL
- Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel
- (2014) Y. B. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
- (2014) W. Xiong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The locust genome provides insight into swarm formation and long-distance flight
- (2014) Xianhui Wang et al. Nature Communications
- RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
- (2013) P. Novak et al. BIOINFORMATICS
- Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis
- (2013) Magali Soumillon et al. Cell Reports
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- The struggle for life of the genome's selfish architects
- (2011) Aurélie Hua-Van et al. Biology Direct
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Chromosomes, Conflict, and Epigenetics: Chromosomal Speciation Revisited
- (2010) Judith D. Brown et al. Annual Review of Genomics and Human Genetics
- Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
- (2010) Petr Novák et al. BMC BIOINFORMATICS
- Population Genomics of Transposable Elements in Drosophila melanogaster
- (2010) D. A. Petrov et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genetic Testing of the Hypothesis That Hybrid Male Lethality Results From a Failure in Dosage Compensation
- (2009) D. A. Barbash GENETICS
- Long-term conservation vs high sequence divergence: the case of an extraordinarily old satellite DNA in bivalve mollusks
- (2009) M Plohl et al. HEREDITY
- Junk DNA promotes sex chromosome evolution
- (2009) S Matsunaga HEREDITY
- Re-examination of a proposed case of stasipatric speciation: phylogeography of the Australian morabine grasshoppers (Vandiemenella viaticaspecies group)
- (2009) TAKESHI KAWAKAMI et al. MOLECULAR ECOLOGY
- Effective population size and patterns of molecular evolution and variation
- (2009) Brian Charlesworth NATURE REVIEWS GENETICS
- Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila
- (2009) Patrick M. Ferree et al. PLOS BIOLOGY
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More