Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome
出版年份 2021 全文链接
标题
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome
作者
关键词
-
出版物
PLANTA
Volume 253, Issue 4, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-04-01
DOI
10.1007/s00425-021-03598-0
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Great Abundance of Satellite DNA in Proceratophrys (Anura, Odontophrynidae) Revealed by Genome Sequencing
- (2020) Marcelo J. da Silva et al. CYTOGENETIC AND GENOME RESEARCH
- Comparative cytogenetic maps of Passiflora alata and P. watsoniana (Passifloraceae) using BAC-FISH
- (2020) Yhanndra Dias et al. PLANT SYSTEMATICS AND EVOLUTION
- Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae)
- (2020) Jamie McCann et al. Frontiers in Plant Science
- High dynamism for neo-sex chromosomes: satellite DNAs reveal complex evolution in a grasshopper
- (2020) Ana B. S. M. Ferretti et al. HEREDITY
- Satellitome Analysis in the Ladybird Beetle Hippodamia variegata (Coleoptera, Coccinellidae)
- (2020) Pablo Mora et al. Genes
- Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta
- (2020) Pavel Neumann et al. NEW PHYTOLOGIST
- Chromosome‐level reference genome assembly provides insights into aroma biosynthesis in passion fruit ( Passiflora edulis )
- (2020) Dongna Ma et al. Molecular Ecology Resources
- The role of chromosome changes in the diversification of Passiflora L. (Passifloraceae)
- (2019) Mariela A. Sader et al. SYSTEMATICS AND BIODIVERSITY
- Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification
- (2019) Pavel Neumann et al. Mobile DNA
- Correction to: low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: citogenomic characterization of transposable elements and satellite DNA
- (2019) Vanessa Carvalho Cayres Pamponét et al. BMC GENOMICS
- Identification of passion fruit (Passiflora edulis) chromosomes using BAC-FISH
- (2019) M. A. Sader et al. CHROMOSOME RESEARCH
- Satellitome landscape analysis of Megaleporinus macrocephalus (Teleostei, Anostomidae) reveals intense accumulation of satellite sequences on the heteromorphic sex chromosome
- (2019) Ricardo Utsunomia et al. Scientific Reports
- Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis
- (2019) Zirlane Portugal da Costa et al. MOLECULAR BIOLOGY REPORTS
- Diversity of repetitive sequences within compact genomes of Phaseolus L. beans and allied genera Cajanus L. and Vigna Savi
- (2019) Tiago Ribeiro et al. CHROMOSOME RESEARCH
- Evolutionary convergence or homology? Comparative cytogenomics of Caesalpinia group species (Leguminosae) reveals diversification in the pericentromeric heterochromatic composition
- (2019) Brena Van-Lume et al. PLANTA
- Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing
- (2018) Laura Ávila Robledillo et al. Scientific Reports
- Tandem Repeats and Repeatomes: Delving Deeper into the ‘Dark Matter’ of Genomes
- (2018) Anthony J. Hannan EBioMedicine
- OUP accepted manuscript
- (2018) ANNALS OF BOTANY
- Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat
- (2018) Ilya Kirov et al. Comparative Cytogenetics
- TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
- (2017) Petr Novák et al. NUCLEIC ACIDS RESEARCH
- Satellite DNA: An Evolving Topic
- (2017) Manuel Garrido-Ramos Genes
- Comparative repeatome analysis on Triatoma infestans Andean and Non-Andean lineages, main vector of Chagas disease
- (2017) Sebastián Pita et al. PLoS One
- Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening
- (2016) Ophélie Jouffroy et al. BMC GENOMICS
- Impact and insights from ancient repetitive elements in plant genomes
- (2016) Florian Maumus et al. CURRENT OPINION IN PLANT BIOLOGY
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- Evolutionary dynamics of satellite DNA repeats from Phaseolus beans
- (2016) Tiago Ribeiro et al. PROTOPLASMA
- The Arabidopsis thaliana mobilome and its impact at the species level
- (2016) Leandro Quadrana et al. eLife
- High-throughput analysis of the satellitome illuminates satellite DNA evolution
- (2016) Francisco J. Ruiz-Ruano et al. Scientific Reports
- Repetitive DNA in eukaryotic genomes
- (2015) Maria Assunta Biscotti et al. CHROMOSOME RESEARCH
- Completing the human genome: the progress and challenge of satellite DNA assembly
- (2015) Karen H. Miga CHROMOSOME RESEARCH
- Satellite DNA in Plants: More than Just Rubbish
- (2015) Manuel A. Garrido-Ramos CYTOGENETIC AND GENOME RESEARCH
- The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology
- (2015) Martijn F.L. Derks et al. Genome Biology and Evolution
- An Exploration into Fern Genome Space
- (2015) Paul G. Wolf et al. Genome Biology and Evolution
- De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)
- (2015) Clément Goubert et al. Genome Biology and Evolution
- TheSolanum commersoniiGenome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives
- (2015) Riccardo Aversano et al. PLANT CELL
- In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae
- (2015) Jiří Macas et al. PLoS One
- Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms
- (2014) Andreas Fleischmann et al. ANNALS OF BOTANY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Virus-Like Attachment Sites and Plastic CpG Islands: Landmarks of Diversity in Plant Del Retrotransposons
- (2014) Guilherme M. Q. Cruz et al. PLoS One
- RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
- (2013) P. Novak et al. BIOINFORMATICS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Architecture and evolution of a minute plant genome
- (2013) Enrique Ibarra-Laclette et al. NATURE
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- The holocentric speciesLuzula elegansshows interplay between centromere and large-scale genome organization
- (2012) Stefan Heckmann et al. PLANT JOURNAL
- Dynamic interactions between transposable elements and their hosts
- (2011) Henry L. Levin et al. NATURE REVIEWS GENETICS
- Organisation of the plant genome in chromosomes
- (2011) J. S. Pat Heslop-Harrison et al. PLANT JOURNAL
- Does Variation in Genome Sizes Reflect Adaptive or Neutral Processes? New Clues from Passiflora
- (2011) Karla S. C. Yotoko et al. PLoS One
- Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
- (2011) Robert Schmieder et al. PLoS One
- Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia
- (2011) Jiří Macas et al. PLoS One
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Plant centromeric retrotransposons: a structural and cytogenetic perspective
- (2011) Pavel Neumann et al. Mobile DNA
- Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies
- (2010) Kateřina Ambrožová et al. ANNALS OF BOTANY
- Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
- (2010) Petr Novák et al. BMC BIOINFORMATICS
- The largest eukaryotic genome of them all?
- (2010) JAUME PELLICER et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Cytogenetic map of common bean (Phaseolus vulgaris L.)
- (2010) Artur Fonsêca et al. CHROMOSOME RESEARCH
- Role of Fluorescence in situ Hybridization in Sequencing the Tomato Genome
- (2009) S.M. Stack et al. CYTOGENETIC AND GENOME RESEARCH
- Transposable Elements and Factors Influencing their Success in Eukaryotes
- (2009) E. J. Pritham JOURNAL OF HEREDITY
- Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
- (2009) J. S. Hawkins et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
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