Can omics deliver temperature resilient ready-to-grow crops?

A Heat Stress Responsive NAC Transcription Factor Heterodimer Plays Key Roles in Rice Grain Filling

(2021) Ye Ren et al.   JOURNAL OF EXPERIMENTAL BOTANY

Omics: The way forward to enhance abiotic stress tolerance in Brassica napus L.

(2021) Ali Raza et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

The pathogen Moniliophthora perniciosa promotes differential proteomic modulation of cacao genotypes with contrasting resistance to witches´ broom disease

(2020) Everton Cruz dos Santos et al.   BMC PLANT BIOLOGY

Metabolomic analyses reveal substances that contribute to the increased freezing tolerance of alfalfa (Medicago sativa L.) after continuous water deficit

(2020) Hongyu Xu et al.   BMC PLANT BIOLOGY

Differential physiological, transcriptomic and metabolomic responses of Arabidopsis leaves under prolonged warming and heat shock

(2020) Li Wang et al.   BMC PLANT BIOLOGY

Dynamic Transcriptome Analysis of Anther Response to Heat Stress during Anthesis in Thermotolerant Rice (Oryza sativa L.)

(2020) Gang Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Glycosyltransferase OsUGT90A1 helps protect the plasma membrane during chilling stress in rice

(2020) Yao Shi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of main-effect quantitative trait loci (QTLs) for low-temperature stress tolerance germination- and early seedling vigor-related traits in rice (Oryza sativa L.)

(2020) S. Najeeb et al.   MOLECULAR BREEDING

YODA-HSP90 Module Regulates Phosphorylation-Dependent Inactivation of SPEECHLESS to Control Stomatal Development under Acute Heat Stress in Arabidopsis

(2020) Despina Samakovli et al.   Molecular Plant

Plasma membrane aquaporins PIPs act in concert to regulate cold acclimation and freezing tolerance responses in Arabidopsis thaliana

(2020) Arifa Rahman et al.   PLANT AND CELL PHYSIOLOGY

Lsi1 plays an active role in enhancing the chilling tolerance of rice roots

(2020) Zhong Li et al.   PLANT GROWTH REGULATION

Fine mapping of the qHTB1-1QTL, which confers heat tolerance at the booting stage, using an Oryza rufipogon Griff. introgression line

(2020) Zhibin Cao et al.   THEORETICAL AND APPLIED GENETICS

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

Rational Improvement of Rice Yield and Cold Tolerance by Editing the Three Genes OsPIN5b, GS3, and OsMYB30 With the CRISPR–Cas9 System

(2020) Yafei Zeng et al.   Frontiers in Plant Science

Transcriptomic and proteomic profiles of II YOU 838 (Oryza sativa) provide insights into heat stress tolerance in hybrid rice

(2020) Yan Wang et al.   PeerJ

The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

(2020) Elisabet Martínez-Sancho et al.   Scientific Data

Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice

(2020) Ranjita Thapa et al.   Frontiers in Genetics

Comparative transcriptome analysis reveals the responses of winter rye to cold stress

(2020) Yu Kong et al.   ACTA PHYSIOLOGIAE PLANTARUM

Genome-Wide Association Mapping for Heat Stress Responsive Traits in Field Pea

(2020) Endale G. Tafesse et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ribosome Profiling in Plants: What is NOT lost in translation?

(2020) Udaykumar Kage et al.   JOURNAL OF EXPERIMENTAL BOTANY

iTRAQ-based comparative proteomic analysis of two coconut varieties reveals aromatic coconut cold-sensitive in response to low temperature

(2020) Yaodong Yang et al.   Journal of Proteomics

Genome-wide association study reveals the genetic basis of cold tolerance in wheat

(2020) Yong Zhao et al.   MOLECULAR BREEDING

Growth and physio-biochemical responses of maize (Zea mays L.) to drought and heat stresses

(2020) Madiha Ayub et al.   PLANT BIOSYSTEMS

Cold acclimation and freezing tolerance in three Eucalyptus species: A metabolomic and proteomic approach

(2020) Oberschelp Gustavo Pedro Javier et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Effects of strigolactone on photosynthetic and physiological characteristics in salt-stressed rice seedlings

(2020) Fenglou Ling et al.   Scientific Reports

Characterization of cold stress responses in different rapeseed ecotypes based on metabolomics and transcriptomics analyses

(2020) Hongju Jian et al.   PeerJ

Photosynthetic activity of indica rice sister lines with contrasting cold tolerance

(2020) Janete Mariza Adamski et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Exogenous Ascorbic Acid Induced Chilling Tolerance in Tomato Plants Through Modulating Metabolism, Osmolytes, Antioxidants, and Transcriptional Regulation of Catalase and Heat Shock Proteins

(2020) Amr Elkelish et al.   Plants-Basel

Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era

(2020) Luca Ambrosino et al.   Plants-Basel

Comparative metabolomics analysis of the response to cold stress of resistant and susceptible Tibetan hulless barley (Hordeum distichon)

(2020) Chunbao Yang et al.   PHYTOCHEMISTRY

Reactive Oxygen Species and Antioxidant Defense in Plants under Abiotic Stress: Revisiting the Crucial Role of a Universal Defense Regulator

(2020) Mirza Hasanuzzaman et al.   Antioxidants

Maize Tolerance against Drought and Chilling Stresses Varied with Root Morphology and Antioxidative Defense System

(2020) Hafiz Athar Hussain et al.   Plants-Basel

Comparative analysis and functional identification of temperature-sensitive miRNA in Arabidopsis anthers

(2020) Yichun Lin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

iTRAQ-based comparative proteomic analysis reveals high temperature accelerated leaf senescence of tobacco (Nicotiana tabacum L.) during flue-curing

(2020) Shengjiang Wu et al.   GENOMICS

Eco-physiological and Biochemical Responses of Rapeseed (Brassica napus L.) to Abiotic Stresses: Consequences and Mitigation Strategies

(2020) Ali Raza   JOURNAL OF PLANT GROWTH REGULATION

Multiple Cold Tolerance Trait Phenotyping Reveals Shared Quantitative Trait Loci in Oryza sativa

(2020) Naoki Shimoyama et al.   Rice

Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants

(2020) Ali Raza   PLANT CELL REPORTS

Overexpression of SrDXS1 and SrKAH enhances steviol glycosides content in transgenic Stevia plants

(2019) Junshi Zheng et al.   BMC PLANT BIOLOGY

Identification of new regulators through transcriptome analysis that regulate anthocyanin biosynthesis in apple leaves at low temperatures

(2019) Tingting Song et al.   PLoS One

Proteomic and transcriptomic analysis to unravel the influence of high temperature on banana fruit during postharvest storage

(2019) Taotao Li et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Using Plant Phenomics to Exploit the Gains of Genomics

(2019) Aditya Pratap et al.   Agronomy-Basel

Crop Improvement Through Temperature Resilience

(2019) Jingyu Zhang et al.   Annual Review of Plant Biology

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

(2019) Rajeev K. Varshney et al.   NATURE GENETICS

iTRAQ-based protein profiling of peach fruit during ripening and senescence under different temperatures

(2019) Chen Huan et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress

(2019) Yuanyuan Pu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptomic and Metabolomic Analysis of the Heat-Stress Response of Populus tomentosa Carr.

(2019) Shixiong Ren et al.   Forests

Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

(2019) Junqin Wen et al.   BMC PLANT BIOLOGY

PUB25 and PUB26 Promote Plant Freezing Tolerance by Degrading the Cold Signaling Negative Regulator MYB15

(2019) Xi Wang et al.   DEVELOPMENTAL CELL

Integration of proteomics and metabolomics data of early and middle season Hass avocados under heat treatment

(2019) Virgílio Gavicho Uarrota et al.   FOOD CHEMISTRY

Modern Trends in Plant Genome Editing: An Inclusive Review of the CRISPR/Cas9 Toolbox

(2019) Ali Razzaq et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Application of Melatonin-Enhanced Tolerance to High-Temperature Stress in Cherry Radish (Raphanus sativus L. var. radculus pers)

(2019) Chunhua Jia et al.   JOURNAL OF PLANT GROWTH REGULATION

Evaluation of grain yield in fifty-eight spring bread wheat genotypes grown under heat stress

(2019) Khair Mohammad Youldash et al.   PAKISTAN JOURNAL OF BOTANY

QTL-seq reveals genomic regions associated with spikelet fertility in response to a high temperature in rice (Oryza sativa L.)

(2019) Phakchana Nubankoh et al.   PLANT CELL REPORTS

Effect of Different Temperatures on Germination and Seedling Growth of Primed Seeds of Tomato

(2019) K. Nafees et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Comparative transcriptome analysis of panicle development under heat stress in two rice (Oryza sativa L.) cultivars differing in heat tolerance

(2019) Yaliang Wang et al.   PeerJ

Genetic and physiological mechanisms of freezing tolerance in locally adapted populations of a winter annual

(2019) Brian J. Sanderson et al.   AMERICAN JOURNAL OF BOTANY

Combined transcriptomic and proteomic analysis of cold stress induced sugar accumulation and heat shock proteins expression during postharvest potato tuber storage

(2019) Qiong Lin et al.   FOOD CHEMISTRY

Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress

(2019) Jing Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phenotyping reproductive stage chilling and frost tolerance in wheat using targeted metabolome and lipidome profiling

(2019) Bo Eng Cheong et al.   Metabolomics

Dissecting the genetics of cold tolerance in a multiparental maize population

(2019) Q. Yi et al.   THEORETICAL AND APPLIED GENETICS

Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress

(2019) Balpreet K. Dhatt et al.   Frontiers in Plant Science

Root transcriptome analysis of Saccharum spontaneum uncovers key genes and pathways in response to low-temperature stress

(2019) S. Dharshini et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Metabolic analysis of salicylic acid-induced chilling tolerance of banana using NMR

(2019) Lin Chen et al.   FOOD RESEARCH INTERNATIONAL

RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism

(2019) Isiaka Ibrahim Muhammad et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A membrane‐associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice

(2019) Xue‐Huan Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Tuber transcriptome profiling of eight potato cultivars with different cold-induced sweetening responses to cold storage

(2019) Helen H. Tai et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Metabolic profile analysis and identification of key metabolites during rice seed germination under low-temperature stress

(2019) Meng Yang et al.   PLANT SCIENCE

Proteomic variation in Vitis amurensis and V. vinifera buds during cold acclimation

(2019) Valerie Farai Masocha et al.   SCIENTIA HORTICULTURAE

Metabolomics: A Way Forward for Crop Improvement

(2019) Ali Razzaq et al.   Metabolites

Can genomics deliver climate-change ready crops?

(2018) Rajeev K Varshney et al.   CURRENT OPINION IN PLANT BIOLOGY

Mapping QTLs for cold tolerance at seedling stage using an Oryza sativa × O. rufipogon backcross inbred line population

(2018) S. Yu et al.   Czech Journal of Genetics and Plant Breeding

Impact of high temperature on heterosis and general combining ability in spring canola ( Brassica napus L.)

(2018) C.B. Koscielny et al.   FIELD CROPS RESEARCH

Genomic and transcriptomic analyses of HD-Zip family transcription factors and their responses to abiotic stress in tea plant ( Camellia sinensis )

(2018) Wei Shen et al.   GENOMICS

Grain yield of wheat (Triticum aestivum L.) under long-term heat stress is sink-limited with stronger inhibition of kernel setting than grain filling

(2018) Birgit W. Hütsch et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Plant carbon metabolism and climate change: elevated CO2 and temperature impacts on photosynthesis, photorespiration and respiration

(2018) Mirindi Eric Dusenge et al.   NEW PHYTOLOGIST

Overexpression of VaWRKY14 increases drought tolerance in Arabidopsis by modulating the expression of stress-related genes

(2018) Langlang Zhang et al.   PLANT CELL REPORTS

Identification and validation of QTLs for cold tolerance at the booting stage and other agronomic traits in a rice cross of a Japanese tolerant variety, Hananomai, and a NERICA parent, WAB56-104

(2018) Cornelius Mbathi Wainaina et al.   PLANT PRODUCTION SCIENCE

Mechanism of freeze-thaw injury and recovery: A cool retrospective and warming up to new ideas

(2018) Rajeev Arora   PLANT SCIENCE

Projected climate and agronomic implications for corn production in the Northeastern United States

(2018) Rishi Prasad et al.   PLoS One

Native RNA-Sequencing Throws its Hat into the Transcriptomics Ring

(2018) Shobbir Hussain   TRENDS IN BIOCHEMICAL SCIENCES

Molecular Regulation of CBF Signaling in Cold Acclimation

(2018) Yiting Shi et al.   TRENDS IN PLANT SCIENCE

Reduction of Tomato-Plant Chilling Tolerance by CRISPR–Cas9-Mediated SlCBF1 Mutagenesis

(2018) Rui Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Impact of High Temperature and Drought Stresses on Chickpea Production

(2018) Viola Devasirvatham et al.   Agronomy-Basel

iTRAQ-Based Comparative Proteomic Analysis of the Roots of TWO Winter Turnip Rapes (Brassica rapa L.) with Different Freezing-Tolerance

(2018) Xiucun Zeng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

(2018) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

Harnessing Integrated Omics Approaches For Plant Specialized Metabolism Research: New Insights Into Shikonin Biosynthesis

(2018) Darren C J Wong   PLANT AND CELL PHYSIOLOGY

Comparative transcriptome analysis to elucidate the enhanced thermotolerance of tea plants (Camellia sinensis) treated with exogenous calcium

(2018) Mingle Wang et al.   PLANTA

Heat Stress Tolerance in Rice (Oryza sativa L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress

(2018) Newton Lwiyiso Kilasi et al.   Frontiers in Plant Science

Comparative metabolic profiling of Vitis amurensis and Vitis vinifera during cold acclimation

(2018) Fengmei Chai et al.   Horticulture Research

Performance Assessment of Drought Tolerant Maize Hybrids under Combined Drought and Heat Stress

(2018) Silvestro Meseka et al.   Agronomy-Basel

Exogenous application of plant growth regulators (PGRs) induces chilling tolerance in short-duration hybrid maize

(2017) Muhammad Ahmed Waqas et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Identification of QTLs controlling low-temperature germinability and cold tolerance at the seedling stage in rice (Oryza Sativa L.)

(2017) L. M. Yang et al.   EUPHYTICA

Field crops and the fear of heat stress—Opportunities, challenges and future directions

(2017) P.V. Vara Prasad et al.   FIELD CROPS RESEARCH

Knock out of the annexin gene OsAnn3 via CRISPR/Cas9-mediated genome editing decreased cold tolerance in rice

(2017) Chunxiu Shen et al.   JOURNAL OF PLANT BIOLOGY

Morphological and physiological responses of different wheat genotypes to chilling stress: a cue to explain yield loss

(2017) Pu-Fang Li et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Translating knowledge about abiotic stress tolerance to breeding programmes

(2017) Matthew Gilliham et al.   PLANT JOURNAL

PIF3 is a negative regulator of theCBFpathway and freezing tolerance inArabidopsis

(2017) Bochen Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Drought, Heat and Their Interaction on the Growth, Yield and Photosynthetic Function of Lentil (Lens culinaris Medikus) Genotypes Varying in Heat and Drought Sensitivity

(2017) Akanksha Sehgal et al.   Frontiers in Plant Science

Physiological and transcriptomic analyses reveal a response mechanism to cold stress in Santalum album L. leaves

(2017) Xinhua Zhang et al.   Scientific Reports

Proteomics: Technologies and Their Applications

(2016) Bilal Aslam et al.   JOURNAL OF CHROMATOGRAPHIC SCIENCE

Thecbfstriple mutants reveal the essential functions ofCBFsin cold acclimation and allow the definition of CBF regulons inArabidopsis

(2016) Yuxin Jia et al.   NEW PHYTOLOGIST

Convergence in the temperature response of leaf respiration across biomes and plant functional types

(2016) Mary A. Heskel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Verification of QTL Associated with Frost Tolerance Using Linkage Mapping and GWAS in Winter Faba Bean

(2016) Ahmed Sallam et al.   Frontiers in Plant Science

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles

(2016) Oswaldo Valdés-López et al.   Frontiers in Plant Science

Responses of Rapid Viscoanalyzer Profile and Other Rice Grain Qualities to Exogenously Applied Plant Growth Regulators under High Day and High Night Temperatures

(2016) Shah Fahad et al.   PLoS One

Ranges of critical temperature and water potential values for the germination of species worldwide: Contribution to a seed trait database

(2015) C. Dürr et al.   AGRICULTURAL AND FOREST METEOROLOGY

Modulation of mitochondrial membrane integrity and ROS formation by high temperature in Saccharomyces cerevisiae

(2015) Min Zhang et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

Plant phenotyping: from bean weighing to image analysis

(2015) Achim Walter et al.   Plant Methods

Frost Induces Respiration and Accelerates Carbon Depletion in Trees

(2015) Or Sperling et al.   PLoS One

Chemical and physiological responses of four Turkish red pine (Pinus brutia Ten.) provenances to cold temperature treatments

(2014) Dilek Yildiz et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Improved heat stress tolerance of wheat seedlings by bacterial seed treatment

(2014) Islam A. Abd El-Daim et al.   PLANT AND SOIL

Heat stress in crop plants: its nature, impacts and integrated breeding strategies to improve heat tolerance

(2014) Uday Chand Jha et al.   PLANT BREEDING

Temperature response of photosynthesis in C3, C4, and CAM plants: temperature acclimation and temperature adaptation

(2013) Wataru Yamori et al.   PHOTOSYNTHESIS RESEARCH

Plant respiration and photosynthesis in global-scale models: incorporating acclimation to temperature and CO2

(2012) Nicholas G Smith et al.   GLOBAL CHANGE BIOLOGY

High-throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF

(2012) Llorenç Cabrera-Bosquet et al.   Journal of Integrative Plant Biology

Temperature thresholds and crop production: a review

(2011) Qunying Luo   CLIMATIC CHANGE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS