标题
RNA sequencing: advances, challenges and opportunities
作者
关键词
-
出版物
NATURE REVIEWS GENETICS
Volume 12, Issue 2, Pages 87-98
出版商
Springer Nature
发表日期
2010-12-30
DOI
10.1038/nrg2934
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation
- (2010) Fatih Ozsolak et al. CELL
- Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells
- (2010) Natalia Shcherbik et al. EMBO REPORTS
- Digital transcriptome profiling from attomole-level RNA samples
- (2010) F. Ozsolak et al. GENOME RESEARCH
- Integrative analysis of the melanoma transcriptome
- (2010) M. F. Berger et al. GENOME RESEARCH
- The Lkb1 metabolic sensor maintains haematopoietic stem cell survival
- (2010) Sushma Gurumurthy et al. NATURE
- New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism
- (2010) Philipp Kapranov et al. NATURE
- Expansion of the eukaryotic proteome by alternative splicing
- (2010) Timothy W. Nilsen et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
- (2010) Nallasivam Palanisamy et al. NATURE MEDICINE
- Amplification-free digital gene expression profiling from minute cell quantities
- (2010) Fatih Ozsolak et al. NATURE METHODS
- FRT-seq: amplification-free, strand-specific transcriptome sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
- (2010) Charles Plessy et al. NATURE METHODS
- A paired-end sequencing strategy to map the complex landscape of transcription initiation
- (2010) Ting Ni et al. NATURE METHODS
- Comprehensive comparative analysis of strand-specific RNA sequencing methods
- (2010) Joshua Z Levin et al. NATURE METHODS
- Replication of individual DNA molecules under electronic control using a protein nanopore
- (2010) Felix Olasagasti et al. Nature Nanotechnology
- Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
- (2010) Hugues Richard et al. NUCLEIC ACIDS RESEARCH
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- Global analysis of trans-splicing in Drosophila
- (2010) C. J. McManus et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global and unbiased detection of splice junctions from RNA-seq data
- (2010) Adam Ameur et al. GENOME BIOLOGY
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- Statistical inferences for isoform expression in RNA-Seq
- (2009) Hui Jiang et al. BIOINFORMATICS
- RNA-Seq gene expression estimation with read mapping uncertainty
- (2009) Bo Li et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Transcript length bias in RNA-seq data confounds systems biology
- (2009) Alicia Oshlack et al. Biology Direct
- Circulating Tumor Cells Are Transcriptionally Similar to the Primary Tumor in a Murine Prostate Model
- (2009) K. T. Helzer et al. CANCER RESEARCH
- Pervasive transcription constitutes a new level of eukaryotic genome regulation
- (2009) Julia Berretta et al. EMBO REPORTS
- Next generation sequencing of microbial transcriptomes: challenges and opportunities
- (2009) Arnoud H.M. van Vliet FEMS MICROBIOLOGY LETTERS
- Transcriptome sequencing to detect gene fusions in cancer
- (2009) Christopher A. Maher et al. NATURE
- Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
- (2009) Sohrab P. Shah et al. NATURE
- Direct RNA sequencing
- (2009) Fatih Ozsolak et al. NATURE
- Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
- (2009) NATURE
- Quantification of the yeast transcriptome by single-molecule sequencing
- (2009) Doron Lipson et al. NATURE BIOTECHNOLOGY
- Tiny RNAs associated with transcription start sites in animals
- (2009) Ryan J Taft et al. NATURE GENETICS
- Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human
- (2009) Kun Zhang et al. NATURE METHODS
- Is sequencing enlightenment ending the dark age of the transcriptome?
- (2009) Piero Carninci NATURE METHODS
- Virtual terminator nucleotides for next-generation DNA sequencing
- (2009) Jayson Bowers et al. NATURE METHODS
- Limitations and possibilities of small RNA digital gene expression profiling
- (2009) Sam E V Linsen et al. NATURE METHODS
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA
- (2009) Alon Goren et al. NATURE METHODS
- Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
- (2009) Iwanka Kozarewa et al. NATURE METHODS
- Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
- (2009) Christopher D Armour et al. NATURE METHODS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Small silencing RNAs: an expanding universe
- (2009) Megha Ghildiyal et al. NATURE REVIEWS GENETICS
- Regulatory roles of natural antisense transcripts
- (2009) Mohammad Ali Faghihi et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
- (2009) Iouri Chepelev et al. NUCLEIC ACIDS RESEARCH
- Transcriptome analysis by strand-specific sequencing of complementary DNA
- (2009) Dmitri Parkhomchuk et al. NUCLEIC ACIDS RESEARCH
- Enhanced Generation of Induced Pluripotent Stem Cells from a Subpopulation of Human Fibroblasts
- (2009) James A. Byrne et al. PLoS One
- Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
- (2009) Qi Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chimeric transcript discovery by paired-end transcriptome sequencing
- (2009) C. A. Maher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses
- (2009) I. Amit et al. SCIENCE
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
- (2009) Joshua Z Levin et al. GENOME BIOLOGY
- When good transcripts go bad: artifactual RT-PCR ‘splicing’ and genome analysis
- (2008) Scott William Roy et al. BIOESSAYS
- Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells
- (2008) Alexander Marson et al. CELL
- Chromatin structure analyses identify miRNA promoters
- (2008) F. Ozsolak et al. GENES & DEVELOPMENT
- Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- (2008) E. Valen et al. GENOME RESEARCH
- Characterizing the mouse ES cell transcriptome with Illumina sequencing
- (2008) Ruben Rosenkranz et al. GENOMICS
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Fixing the front end
- (2008) Ken Garber NATURE BIOTECHNOLOGY
- Direct multiplexed measurement of gene expression with color-coded probe pairs
- (2008) Gary K Geiss et al. NATURE BIOTECHNOLOGY
- Stem cell transcriptome profiling via massive-scale mRNA sequencing
- (2008) Nicole Cloonan et al. NATURE METHODS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- Exploration of Small RNAs
- (2008) Hideya Kawaji et al. PLoS Genetics
- A Neoplastic Gene Fusion Mimics Trans-Splicing of RNAs in Normal Human Cells
- (2008) H. Li et al. SCIENCE
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- The Antisense Transcriptomes of Human Cells
- (2008) Yiping He et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
- (2008) M. Sultan et al. SCIENCE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
- Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome
- (2008) Jia Qian Wu et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now