Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation

(2018) Eric J.B. von Wettberg et al.   Nature Communications

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests

(2017) Luca Ferretti et al.   GENETICS

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

(2017) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits

(2017) Rajeev K Varshney et al.   NATURE GENETICS

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests

(2017) Luca Ferretti et al.   GENETICS

Rapid breeding and varietal replacement are critical to adaptation of cropping systems in the developing world to climate change

(2017) Gary N. Atlin et al.   Global Food Security-Agriculture Policy Economics and Environment

Multiple post-domestication origins ofkabulichickpea through allelic variation in a diversification-associated transcription factor

(2016) R. Varma Penmetsa et al.   NEW PHYTOLOGIST

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction

(2016) You Tang et al.   Plant Genome

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.)

(2016) Mahendar Thudi et al.   Scientific Reports

Vernalization response in chickpea is controlled by a major QTL

(2015) Srinivasan Samineni et al.   EUPHYTICA

Can the Site-Frequency Spectrum Distinguish Exponential Population Growth from Multiple-Merger Coalescents?

(2015) B. Eldon et al.   GENETICS

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The effect ofVRN1genes on important agronomic traits in high-yielding Canadian soft white spring wheat

(2014) Atif Kamran et al.   PLANT BREEDING

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

(2014) Mahendar Thudi et al.   PLoS One

Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers

(2014) Manish Roorkiwal et al.   PLoS One

The 3,000 rice genomes project

(2014)   GigaScience

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

Traits of relevance to improve yield under terminal drought stress in chickpea (C. arietinum L.)

(2013) J. Kashiwagi et al.   FIELD CROPS RESEARCH

Feeding the future

(2013) Susan McCouch et al.   NATURE

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)

(2013) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum

(2013) Emma S. Mace et al.   Nature Communications

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

SOAPindel: Efficient identification of indels from short paired reads

(2012) S. Li et al.   GENOME RESEARCH

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genomic tools and germplasm diversity for chickpea improvement

(2011) Hari D. Upadhyaya et al.   Plant Genetic Resources-Characterization and Utilization

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association genetics in crop improvement

(2010) J Antoni Rafalski   CURRENT OPINION IN PLANT BIOLOGY

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)

(2008) Hari D Upadhyaya et al.   BMC PLANT BIOLOGY