Bioprospecting of Novel Extremozymes From Prokaryotes—The Advent of Culture-Independent Methods

Current prospective in using cold-active enzymes as eco-friendly detergent additive

(2020) Abdullah A. Al-Ghanayem et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enzymes revolutionize the bioproduction of value-added compounds: From enzyme discovery to special applications

(2020) Birgit Wiltschi et al.   BIOTECHNOLOGY ADVANCES

Improved protein structure prediction using potentials from deep learning

(2020) Andrew W. Senior et al.   NATURE

Crystal Structure and Active Site Engineering of a Halophilic γ-Carbonic Anhydrase

(2020) Malvina Vogler et al.   Frontiers in Microbiology

Understanding High-Salt and Cold Adaptation of a Polyextremophilic Enzyme

(2020) Ram Karan et al.   Microorganisms

Annotation of gene product function from high-throughput studies using the Gene Ontology

(2019) Helen Attrill et al.   Database-The Journal of Biological Databases and Curation

Thermophiles and the applications of their enzymes as new biocatalysts

(2019) Joaquín Atalah et al.   BIORESOURCE TECHNOLOGY

Culturomics of the plant prokaryotic microbiome and the dawn of plant-based culture media – A review

(2019) Mohamed S. Sarhan et al.   Journal of Advanced Research

Culturomics and metagenomics: In understanding of environmental resistome

(2019) Monika Nowrotek et al.   Frontiers of Environmental Science & Engineering

Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods

(2019) Adriana Rego et al.   Frontiers in Microbiology

Editorial: Bioprospecting and Biotechnology of Extremophiles

(2019) Milko A. Jorquera et al.   Frontiers in Bioengineering and Biotechnology

Properties and Applications of Extremozymes from Deep-Sea Extremophilic Microorganisms: A Mini Review

(2019) Min Jin et al.   Marine Drugs

Next generation industrial biotechnology based on extremophilic bacteria

(2018) Guo-Qiang Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Towards a sustainable biobased industry – Highlighting the impact of extremophiles

(2018) Anna Krüger et al.   New Biotechnology

Cold survival strategies for bacteria, recent advancement and potential industrial applications

(2018) Amit S. Dhaulaniya et al.   ARCHIVES OF MICROBIOLOGY

A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool

(2018) Anastassja L. Akal et al.   FEBS Open Bio

Extremozymes: A Potential Source for Industrial Applications

(2017) Kelly Dumorne; et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Xerotolerant bacteria: surviving through a dry spell

(2017) Pedro H. Lebre et al.   NATURE REVIEWS MICROBIOLOGY

Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic Archaea

(2017) Susanne Zweerink et al.   Nature Communications

Effect of the environment on horizontal gene transfer between bacteria and archaea

(2017) Clara A. Fuchsman et al.   PeerJ

High-throughput pyrosequencing used for the discovery of a novel cellulase from a thermophilic cellulose-degrading microbial consortium

(2016) Chao Zhao et al.   BIOTECHNOLOGY LETTERS

Characterization of a cold-active and salt tolerant esterase identified by functional screening of Arctic metagenomic libraries

(2016) Concetta De Santi et al.   BMC BIOCHEMISTRY

Bioprospecting hot spring metagenome: lipase for the production of biodiesel

(2016) Rajesh Kumar Sahoo et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Biochemical characterization of a halophilic, alkalithermophilic protease from Alkalibacillus sp. NM-Da2

(2016) Asmaa R. Abdel-Hamed et al.   EXTREMOPHILES

Analysis of the metatranscriptome of microbial communities of an alkaline hot sulfur spring revealed different gene encoding pathway enzymes associated with energy metabolism

(2016) Swetaleena Tripathy et al.   EXTREMOPHILES

Green chemistry and resource efficiency: towards a green economy

(2016) Roger A. Sheldon   GREEN CHEMISTRY

Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome

(2016) Concetta De Santi et al.   PLoS One

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform

(2016) Kazuki Nakamura et al.   Scientific Reports

Microbial enzymes: industrial progress in 21st century

(2016) Rajendra Singh et al.   3 Biotech

Microbial enzymes: industrial progress in 21st century

(2016) Rajendra Singh et al.   3 Biotech

Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases

(2016) Dimitra Zarafeta et al.   Scientific Reports

Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase

(2015) Antonio Placido et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biotechnological applications of extremophiles, extremozymes and extremolytes

(2015) Noura Raddadi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enhanced functionality and stabilization of a cold active laccase using nanotechnology based activation-immobilization

(2015) Arka Mukhopadhyay et al.   BIORESOURCE TECHNOLOGY

Characterization of a thermostable recombinant β-galactosidase from a thermophilic anaerobic bacterial consortium YTY-70

(2015) Zongbao Liu et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Contemporary molecular tools in microbial ecology and their application to advancing biotechnology

(2015) Mamoon Rashid et al.   BIOTECHNOLOGY ADVANCES

Identification and characterization of a novel salt-tolerant esterase from a Tibetan glacier metagenomic library

(2015) Concetta De Santi et al.   BIOTECHNOLOGY PROGRESS

Enzymes: principles and biotechnological applications

(2015) P. K. Robinson   Essays in Biochemistry

Characterization of a novel thermostable patatin-like protein from a Guaymas basin metagenomic library

(2015) Ling Fu et al.   EXTREMOPHILES

Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries

(2015) Erica Elisa Ferrandi et al.   FEBS Journal

Untapped Resources: Biotechnological Potential of Peptides and Secondary Metabolites in Archaea

(2015) James C. Charlesworth et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Metagenomics of an Alkaline Hot Spring in Galicia (Spain): Microbial Diversity Analysis and Screening for Novel Lipolytic Enzymes

(2015) Olalla López-López et al.   Frontiers in Microbiology

Identification of novel esterase-active enzymes from hot environments by use of the host bacterium Thermus thermophilus

(2015) Benedikt Leis et al.   Frontiers in Microbiology

Purification and characterization of CHpro1, a thermotolerant, alkali-stable and oxidation-resisting protease of Chumathang hotspring

(2015) Reena Singh et al.   Science Bulletin

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

(2015) Franck O. P. Stefani et al.   PLoS One

A New Alkaliphilic Cold-Active Esterase from the Psychrophilic Marine Bacterium Rhodococcus sp.: Functional and Structural Studies and Biotechnological Potential

(2014) Concetta De Santi et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Biomining—biotechnologies for extracting and recovering metals from ores and waste materials

(2014) D Barrie Johnson   CURRENT OPINION IN BIOTECHNOLOGY

Extremozymes—biocatalysts with unique properties from extremophilic microorganisms

(2014) Skander Elleuche et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of a heat-active archaeal β-glucosidase from a hydrothermal spring metagenome

(2014) Carola Schröder et al.   ENZYME AND MICROBIAL TECHNOLOGY

Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”

(2014) Brian P. Hedlund et al.   EXTREMOPHILES

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics

(2014) Zheng-Shuang Hua et al.   ISME Journal

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

Genetically encoded reporters for hyperpolarized xenon magnetic resonance imaging

(2014) Mikhail G. Shapiro et al.   Nature Chemistry

Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics

(2014) Christian Rinke et al.   Nature Protocols

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

(2014) Martin Laurence et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Purification, Characterization, and Potential of Saline Waste Water Remediation of a Polyextremophilicα-Amylase from an Obligate HalophilicAspergillus gracilis

(2014) Imran Ali et al.   Biomed Research International

Mining a database of single amplified genomes from Red Sea brine pool extremophiles—improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA)

(2014) Stefan W. Grötzinger et al.   Frontiers in Microbiology

Challenges of Big Data analysis

(2014) Jianqing Fan et al.   National Science Review

Cloning, overexpression, purification, and characterization of a polyextremophilic β-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi

(2013) Ram Karan et al.   BMC BIOTECHNOLOGY

A survey of tools for variant analysis of next-generation genome sequencing data

(2013) S. Pabinger et al.   BRIEFINGS IN BIOINFORMATICS

A Novel Mercuric Reductase from the Unique Deep Brine Environment of Atlantis II in the Red Sea

(2013) Ahmed Sayed et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Singled out for sequencing

(2013) Kelly Rae Chi   NATURE METHODS

Amino Acid Substitutions in Cold-Adapted Proteins from Halorubrum lacusprofundi, an Extremely Halophilic Microbe from Antarctica

(2013) Shiladitya DasSarma et al.   PLoS One

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

(2013) J. S. McLean et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strategies for Stabilization of Enzymes in Organic Solvents

(2013) Veronika Stepankova et al.   ACS Catalysis

An automated system for high-throughput single cell-based breeding

(2013) Nobuo Yoshimoto et al.   Scientific Reports

Protein Adaptations in Archaeal Extremophiles

(2013) Christopher J. Reed et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Microbial Scout Hypothesis and Microbial Discovery

(2012) S. Buerger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Radiation-resistant extremophiles and their potential in biotechnology and therapeutics

(2012) Prashant Gabani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

End-to-end gene fusions and their impact on the production of multifunctional biomass degrading enzymes

(2012) Mazen Rizk et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Stability of haloalkaliphilic Geomicrobium sp. protease modulated by salt

(2011) R. Karan et al.   BIOCHEMISTRY-MOSCOW

Recent trends in biocatalysis engineering

(2011) Andrés Illanes et al.   BIORESOURCE TECHNOLOGY

Plastics Derived from Biological Sources: Present and Future: A Technical and Environmental Review

(2011) Guo-Qiang Chen et al.   CHEMICAL REVIEWS

Acidophilic bacteria and archaea: acid stable biocatalysts and their potential applications

(2011) Archana Sharma et al.   EXTREMOPHILES

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Extremophiles: radiation resistance microbial reserves and therapeutic implications

(2011) O.V. Singh et al.   JOURNAL OF APPLIED MICROBIOLOGY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Comparison of culture-dependent and -independent methods for bacterial community monitoring during Montasio cheese manufacturing

(2011) Lisa Carraro et al.   RESEARCH IN MICROBIOLOGY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes

(2011) André Antunes et al.   Environmental Microbiology Reports

Structural adaptation of extreme halophilic proteins through decrease of conserved hydrophobic contact surface

(2011) Alessandro Siglioccolo et al.   BMC STRUCTURAL BIOLOGY

Biotechnological uses of enzymes from psychrophiles

(2011) R. Cavicchioli et al.   Microbial Biotechnology

Recent progress and new challenges in metagenomics for biotechnology

(2010) Ludmila Chistoserdova   BIOTECHNOLOGY LETTERS

Extremophiles and their application to veterinary medicine

(2010) Jane Ann Irwin   ENVIRONMENTAL TECHNOLOGY

Purification and characterization of a solvent‐stable protease fromGeomicrobiumsp. EMB2

(2010) Ram Karan et al.   ENVIRONMENTAL TECHNOLOGY

Biotechnological applications of psychrophiles

(2010) Rosa Margesin et al.   ENVIRONMENTAL TECHNOLOGY

Industrial and environmental applications of halophilic microorganisms

(2010) Aharon Oren   ENVIRONMENTAL TECHNOLOGY

A novel organic solvent tolerant protease from a newly isolated Geomicrobium sp. EMB2 (MTCC 10310): production optimization by response surface methodology

(2010) Ram Karan et al.   New Biotechnology

One Bacterial Cell, One Complete Genome

(2010) Tanja Woyke et al.   PLoS One

Protein rigidity and thermophilic adaptation

(2010) Sebastian Radestock et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Compatible Solute Ectoine Protects against Nanoparticle-induced Neutrophilic Lung Inflammation

(2009) Ulrich Sydlik et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Synthesis and production of polyhydroxyalkanoates by halophiles: current potential and future prospects

(2009) Jorge Quillaguamán et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A novel approach for enhancing the catalytic efficiency of a protease at low temperature: Reduction in substrate inhibition by chemical modification

(2009) Khawar Sohail Siddiqui et al.   BIOTECHNOLOGY AND BIOENGINEERING

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

(2009) D. S. Horner et al.   BRIEFINGS IN BIOINFORMATICS

Green Chemistry: Principles and Practice

(2009) Paul Anastas et al.   CHEMICAL SOCIETY REVIEWS

A changing of the guard

(2009) Philip Hugenholtz et al.   ENVIRONMENTAL MICROBIOLOGY

Prevention of the ultraviolet effects on clinical and histopathological changes, as well as the heat shock protein-70 expression in mouse skin by topical application of algal UV-absorbing compounds

(2009) F. de la Coba et al.   JOURNAL OF DERMATOLOGICAL SCIENCE

Evolution of Stability in a Cold-Active Enzyme Elicits Specificity Relaxation and Highlights Substrate-Related Effects on Temperature Adaptation

(2009) Pietro Gatti-Lafranconi et al.   JOURNAL OF MOLECULAR BIOLOGY

Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues

(2008) Dan Frumkin et al.   BMC BIOTECHNOLOGY

A Bioinformatician's Guide to Metagenomics

(2008) V. Kunin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Metagenomics

(2008) Philip Hugenholtz et al.   NATURE