Research Advances of Beneficial Microbiota Associated with Crop Plants

Promoting Model Systems of Microbiota–Medicinal Plant Interactions

(2020) Valentina Maggini et al.   TRENDS IN PLANT SCIENCE

Isolation and screening of indigenous bacteria from phosphogypsum-contaminated soils for their potential in promoting plant growth and trace elements mobilization

(2020) Jihen Jalali et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Silicate Solubilization and Plant Growth Promoting Potential of Rhizobium Sp. Isolated from Rice Rhizosphere

(2019) C. Chandrakala et al.   Silicon

Sinorhizobium fredii HH103 RirA Is Required for Oxidative Stress Resistance and Efficient Symbiosis with Soybean

(2019) Juan Crespo-Rivas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reductive soil disinfestation effectively alleviates the replant failure of Sanqi ginseng through allelochemical degradation and pathogen suppression

(2019) Yunlong Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

Trichoderma asperellum T1 mediated antifungal activity and induced defense response against leaf spot fungi in lettuce (Lactuca sativa L.)

(2019) Burhanah Baiyee et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Impact of double inoculation with Bradyrhizobium japonicum E109 and Azospirillum brasilense Az39 on soybean plants grown under arsenic stress

(2019) Ana L. Armendariz et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae

(2019) Lei Tian et al.   Rice

Seed Treatment with Trichoderma longibrachiatum T6 Promotes Wheat Seedling Growth under NaCl Stress Through Activating the Enzymatic and Nonenzymatic Antioxidant Defense Systems

(2019) Shuwu Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant allelochemicals: agronomic, nutritional and ecological relevance in the soil system

(2019) Aurelio Scavo et al.   PLANT AND SOIL

Deciphering Microbiome Related to Rusty Roots of Panax ginseng and Evaluation of Antagonists Against Pathogenic Ilyonectria

(2019) Defei Liu et al.   Frontiers in Microbiology

Genomic Insights Into Plant-Growth-Promoting Potentialities of the Genus Frankia

(2019) Imen Nouioui et al.   Frontiers in Microbiology

Strigolactones positively regulate defense against Magnaporthe oryzae in rice (Oryza sativa)

(2019) Fahad Nasir et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Phytohormones (Auxin, Gibberellin) and ACC Deaminase In Vitro Synthesized by the Mycoparasitic Trichoderma DEMTkZ3A0 Strain and Changes in the Level of Auxin and Plant Resistance Markers in Wheat Seedlings Inoculated with this Strain Conidia

(2019) Jolanta Jaroszuk-Ściseł et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Purification and Characterization of a Novel Antifungal Flagellin Protein from Endophyte Bacillus methylotrophicus NJ13 against Ilyonectria robusta

(2019) Yun Jiang et al.   Microorganisms

Community structures of the rhizomicrobiomes of cultivated and wild soybeans in their continuous cropping

(2019) Lei Tian et al.   MICROBIOLOGICAL RESEARCH

The nitrogen-fixing Frankia significantly increases growth, uprooting resistance and root tensile strength of Alnus formosana

(2018) Lee Jung-Tai et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Food quality assessment in organic vs. conventional agricultural produce: Findings and issues

(2018) Tiziano Gomiero   APPLIED SOIL ECOLOGY

Soil commensal rhizobia promote Rhizobium etli nodulation efficiency through CinR-mediated quorum sensing

(2018) Junting Miao et al.   ARCHIVES OF MICROBIOLOGY

Enhancing the efficacy of yeast biocontrol agents against postharvest pathogens through nutrient profiling and the use of other additives

(2018) Betina R. Gramisci et al.   BIOLOGICAL CONTROL

Salinity is a prevailing factor for amelioration of wheat blast by biocontrol agents

(2018) Catalina Cabot et al.   BIOLOGICAL CONTROL

Deep learning models for plant disease detection and diagnosis

(2018) Konstantinos P. Ferentinos   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Yeast cell wall induces disease resistance against Penicillium expansum in pear fruit and the possible mechanisms involved

(2018) Cui Sun et al.   FOOD CHEMISTRY

Aggregate-related changes in soil microbial communities under different ameliorant applications in saline-sodic soils

(2018) Shasha Luo et al.   GEODERMA

The Plant Growth-Promoting Fungus (PGPF) Alternaria sp. A13 Markedly Enhances Salvia miltiorrhiza Root Growth and Active Ingredient Accumulation under Greenhouse and Field Conditions

(2018) Li Zhou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Effect of the biocontrol bacterium Bacillus amyloliquefaciens on the rhizosphere in ginseng plantings

(2018) Lei Tian et al.   INTERNATIONAL MICROBIOLOGY

Drought tolerance during reproductive development is important for increasing wheat yield potential under climate change in Europe

(2018) Nimai Senapati et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biological control agents improve the productivity and induce the resistance against downy mildew of grapevine

(2018) Hany Hassan Ahmed El-Sharkawy et al.   JOURNAL OF PLANT PATHOLOGY

Grass and maize vegetation systems restore saline-sodic soils in the Songnen Plain of northeast China

(2018) Shasha Luo et al.   LAND DEGRADATION & DEVELOPMENT

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Plant growth promoting bacteria as an alternative strategy for salt tolerance in plants: A review

(2018) Muhammad Numan et al.   MICROBIOLOGICAL RESEARCH

Community Structure of Rhizomicrobiomes in Four Medicinal Herbs and Its Implication on Growth Management

(2018) S. Shi et al.   MICROBIOLOGY

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

The impact of domestication and crop improvement on arbuscular mycorrhizal symbiosis in cereals: insights from genetics and genomics

(2018) Ruairidh J. H. Sawers et al.   NEW PHYTOLOGIST

How do arbuscular mycorrhizal fungi handle phosphate? New insight into fine-tuning of phosphate metabolism

(2018) Tatsuhiro Ezawa et al.   NEW PHYTOLOGIST

Arbuscular Mycorrhizal fungi (AMF) protects photosynthetic apparatus of wheat under drought stress

(2018) Sonal Mathur et al.   PHOTOSYNTHESIS RESEARCH

Biocontrol of stem rust disease of wheat using arbuscular mycorrhizal fungi and Trichoderma spp.

(2018) Hany H.A. El-Sharkawy et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Co-evolutionary associations between root-associated microbiomes and root transcriptomes in wild and cultivated rice varieties

(2018) Lei Tian et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Root cell wall solutions for crop plants in saline soils

(2018) Caitlin S. Byrt et al.   PLANT SCIENCE

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial patterns of enzyme activities in the rhizosphere: Effects of root hairs and root radius

(2018) Xiaomin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Roles of Plant-Associated Microbiota in Traditional Herbal Medicine

(2018) Weijuan Huang et al.   TRENDS IN PLANT SCIENCE

Genetic Characterization and Diversity of Rhizobium Isolated From Root Nodules of Mid-Altitude Climbing Bean (Phaseolus vulgaris L.) Varieties

(2018) Gilbert Koskey et al.   Frontiers in Microbiology

Biogeography of arbuscular mycorrhizal fungi (Glomeromycota): a phylogenetic perspective on species distribution patterns

(2018) Sidney L. Stürmer et al.   MYCORRHIZA

A neglected alliance in battles against parasitic plants: arbuscular mycorrhizal and rhizobial symbioses alleviate damage to a legume host by root hemiparasitic Pedicularis species

(2018) Xiao-Lin Sui et al.   NEW PHYTOLOGIST

Plant growth promoting bacteria: role in soil improvement, abiotic and biotic stress management of crops

(2018) Abdul Majeed et al.   PLANT CELL REPORTS

Rhizobia promote the growth of rice shoots by targeting cell signaling, division and expansion

(2018) Qingqing Wu et al.   PLANT MOLECULAR BIOLOGY

Impact of domestication on the evolution of rhizomicrobiome of rice in response to the presence of Magnaporthe oryzae

(2018) Shaohua Shi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Microbial processing of plant residues in the subsoil – The role of biopores

(2018) Callum C. Banfield et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbiomics and Plant Health: An Interdisciplinary and International Workshop on the Plant Microbiome

(2018) Kabin Xie et al.   Molecular Plant

Localization of typical and atypical Frankia isolates from Casuarina sp. in nodules formed on Casuarina equisetifolia

(2018) Spandana Vemulapally et al.   PLANT AND SOIL

Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities

(2018) Yi Zhao et al.   Frontiers in Microbiology

Actinorhizal Signaling Molecules: Frankia Root Hair Deforming Factor Shares Properties With NIN Inducing Factor

(2018) Maimouna Cissoko et al.   Frontiers in Plant Science

Response of microbial communities and enzyme activities to amendments in saline-alkaline soils

(2018) Shaohua Shi et al.   APPLIED SOIL ECOLOGY

Enhancing taxol production in a novel endophytic fungus, Aspergillus aculeatinus Tax-6, isolated from Taxus chinensis var . mairei

(2017) Weichuan Qiao et al.   Fungal Biology

Efficacy of Bacillus subtilis and Bacillus amyloliquefaciens in the control of Aspergillus parasiticus growth and aflatoxins production on pistachio

(2017) Fatemeh Siahmoshteh et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Biocontrol ability of killer yeasts (Saccharomyces cerevisiae ) isolated from wine against Colletotrichum gloeosporioides on grape

(2017) Zongling Liu et al.   JOURNAL OF BASIC MICROBIOLOGY

Soil microbial dynamics and enzyme activities as influenced by organic and inorganic nutrient management in vertisols under aerobic rice cultivation

(2017) S. Jaffar Basha et al.   JOURNAL OF ENVIRONMENTAL BIOLOGY

Exploitation of agro-climatic environment for selection of 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase producing salt tolerant indigenous plant growth promoting rhizobacteria

(2017) Sankalp Misra et al.   MICROBIOLOGICAL RESEARCH

Impacts of domestication on the arbuscular mycorrhizal symbiosis of 27 crop species

(2017) Nieves Martín-Robles et al.   NEW PHYTOLOGIST

Nitrogen nutrition of beech forests in a changing climate: importance of plant-soil-microbe water, carbon, and nitrogen interactions

(2017) Judy Simon et al.   PLANT AND SOIL

Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis

(2017) Allyson M. MacLean et al.   PLANT CELL

Exposure to pesticides and the associated human health effects

(2017) Ki-Hyun Kim et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Chemical, organic and bio-fertilizer management practices effect on soil physicochemical property and antagonistic bacteria abundance of a cotton field: Implications for soil biological quality

(2017) Rui Li et al.   SOIL & TILLAGE RESEARCH

Soil particulate organic matter increases under perennial bioenergy crop agriculture

(2017) I.B. Kantola et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria

(2017) Xiaoxia Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plenty Is No Plague: Streptomyces Symbiosis with Crops

(2017) Thomas Rey et al.   TRENDS IN PLANT SCIENCE

Plant Breeding Goes Microbial

(2017) Zhong Wei et al.   TRENDS IN PLANT SCIENCE

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

The effect of Glomus intraradices on the physiological properties of Panax ginseng and on rhizospheric microbial diversity

(2017) Lei Tian et al.   Journal of Ginseng Research

Engineering Mycorrhizal Symbioses to Alter Plant Metabolism and Improve Crop Health

(2017) Katherine E. French   Frontiers in Microbiology

What Agriculture Can Learn from Native Ecosystems in Building Soil Organic Matter: A Review

(2017) Timothy Crews et al.   Sustainability

Technological Approaches to Sustainable Agriculture at a Crossroads: An Agroecological Perspective

(2017) Miguel Altieri et al.   Sustainability

The interactive effects of arbuscular mycorrhiza and plant growth-promoting rhizobacteria synergistically enhance host plant defences against pathogens

(2017) Alejandro Pérez-de-Luque et al.   Scientific Reports

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

(2016) Corinne Vacher et al.   Annual Review of Ecology Evolution and Systematics

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Root-associated bacterial diversities of Oryza rufipogon and Oryza sativa and their influencing environmental factors

(2016) Lei Tian et al.   ARCHIVES OF MICROBIOLOGY

Arbuscular mycorrhizal fungi reduced the ratios of inorganic/organic arsenic in rice grains

(2016) H. Li et al.   CHEMOSPHERE

Plant–pathogen interactions: toward development of next-generation disease-resistant plants

(2016) Naghmeh Nejat et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Understanding variability in soybean yield and response to P-fertilizer and rhizobium inoculants on farmers’ fields in northern Nigeria

(2016) E. Ronner et al.   FIELD CROPS RESEARCH

Effects of arbuscular mycorrhizal fungi inoculation on carbon and nitrogen distribution and grain yield and nutritional quality in rice (Oryza sativa L.)

(2016) Xue Zhang et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Rhizosphere priming effect on soil organic carbon decomposition under plant species differing in soil acidification and root exudation

(2016) Xiaojuan Wang et al.   NEW PHYTOLOGIST

Enhancement of downy mildew disease resistance in pearl millet by the G_app7 bioactive compound produced by Ganoderma applanatum

(2016) Sudisha Jogaiah et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Dissection of Trichoderma longibrachiatum -induced defense in onion ( Allium cepa L.) against Fusarium oxysporum f. sp. cepa by target metabolite profiling

(2016) Mostafa Abdelrahman et al.   PLANT SCIENCE

Root nodule symbiosis inLotus japonicusdrives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

(2016) Rafal Zgadzaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The vast unknown microbial biosphere

(2016) Carlos Pedrós-Alió et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of the allelochemical coumarin on plants and soil microbial community

(2016) E. Niro et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tolerance to environmental stress by the nitrogen-fixing actinobacterium Frankia and its role in actinorhizal plants adaptation

(2016) Mariama Ngom et al.   SYMBIOSIS

Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

(2016) Matthew Shenton et al.   Rice

Inoculant of Arbuscular Mycorrhizal Fungi (Rhizophagus clarus) Increase Yield of Soybean and Cotton under Field Conditions

(2016) Martha V. T. Cely et al.   Frontiers in Microbiology

Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection

(2016) Sudisha Jogaiah et al.   Scientific Reports

Carbon input from 13C-labelled soybean residues in particulate organic carbon fractions in a Mollisol

(2015) Tengxiang Lian et al.   BIOLOGY AND FERTILITY OF SOILS

An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant

(2015) Sameh S.M. Soliman et al.   CURRENT BIOLOGY

Microbial diversity—exploration of natural ecosystems and microbiomes

(2015) Sean M Gibbons et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Isolation, identification, and ecology of growth and taxol production by an endophytic strain of Paraconiothyrium variabile from English yew trees ( Taxus baccata )

(2015) Supunnika Somjaipeng et al.   Fungal Biology

Coordinated Regulation of Arbuscular Mycorrhizal Fungi and Soybean MAPK Pathway Genes Improved Mycorrhizal Soybean Drought Tolerance

(2015) Zhilei Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Pharmacokinetic synergy from the taxane extract of Taxus chinensis improves the bioavailability of paclitaxel

(2015) Zhihui Liu et al.   PHYTOMEDICINE

Growth responses of introduced Frankia strains to edaphic factors

(2015) Suvidha Samant et al.   PLANT AND SOIL

Improvement of growth, fruit weight and early blight disease protection of tomato plants by rhizosphere bacteria is correlated with their beneficial traits and induced biosynthesis of antioxidant peroxidase and polyphenol oxidase

(2015) Anupama Narendra Babu et al.   PLANT SCIENCE

Symbiotic ability of diverse Frankia strains on Casuarina glauca plants in hydroponic conditions

(2015) Mariama Ngom et al.   SYMBIOSIS

Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics

(2015) Françoise Bringel et al.   Frontiers in Microbiology

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Nodulation competitiveness as a requisite for improved rhizobial inoculants of Trifolium pratense

(2014) Leticia Batista et al.   BIOLOGY AND FERTILITY OF SOILS

Understanding and engineering beneficial plant-microbe interactions: plant growth promotion in energy crops

(2014) Kerrie Farrar et al.   PLANT BIOTECHNOLOGY JOURNAL

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Characterization of rhizosphere fungi that mediate resistance in tomato against bacterial wilt disease

(2013) Sudisha Jogaiah et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrogen supply influences plant growth and transcriptional responses induced by Enterobacter radicincitans in Solanum lycopersicum

(2013) Beatrice Berger et al.   PLANT AND SOIL

Role of plant growth promoting rhizobacteria on antioxidant enzyme activities and tropane alkaloids production of Hyoscyamus niger under water deficit stress

(2013) MANSOUR GHORBANPOUR   TURKISH JOURNAL OF BIOLOGY

Mechanisms of biocontrol and plant growth-promoting activity in soil bacterial species ofBacillusandPseudomonas: a review

(2012) Gustavo Santoyo et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Cytokinins: metabolism and function in plant adaptation to environmental stresses

(2012) Sukbong Ha et al.   TRENDS IN PLANT SCIENCE

The arbuscular mycorrhizal symbiosis enhances the photosynthetic efficiency and the antioxidative response of rice plants subjected to drought stress

(2010) Michel Ruiz-Sánchez et al.   JOURNAL OF PLANT PHYSIOLOGY

Regulation of the Nitrogen Transfer Pathway in the Arbuscular Mycorrhizal Symbiosis: Gene Characterization and the Coordination of Expression with Nitrogen Flux

(2010) C. Tian et al.   PLANT PHYSIOLOGY

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

AMF-induced biocontrol against plant parasitic nematodes in Musa sp.: a systemic effect

(2008) A. Elsen et al.   MYCORRHIZA

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY