Identification of New Leaf Rust Resistance Loci in Wheat and Wild Relatives by Array-Based SNP Genotyping and Association Genetics

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

(2019) Sanu Arora et al.   NATURE BIOTECHNOLOGY

gpart: human genome partitioning and visualization of high-density SNP data by identifying haplotype blocks

(2019) Sun Ah Kim et al.   BIOINFORMATICS

Tracing the ancestry of modern bread wheats

(2019) Caroline Pont et al.   NATURE GENETICS

Advances in Wheat and Pathogen Genomics: Implications for Disease Control

(2018) Beat Keller et al.   Annual Review of Phytopathology

Unlocking the novel genetic diversity and population structure of synthetic Hexaploid wheat

(2018) Madhav Bhatta et al.   BMC GENOMICS

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

Genome-Wide Association Studies to Identify Loci and Candidate Genes Controlling Kernel Weight and Length in a Historical United States Wheat Population

(2018) Sintayehu D. Daba et al.   Frontiers in Plant Science

Genome-wide association analysis of resistance to wheat spindle streak mosaic virus in bread wheat

(2018) D. Hourcade et al.   PLANT PATHOLOGY

DArTseq-based analysis of genomic relationships among species of tribe Triticeae

(2018) Offiong U. Edet et al.   Scientific Reports

Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from section Sitopsis species of Aegilops

(2018) Yuka Miki et al.   DNA RESEARCH

pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study

(2017) Wen-Long Ren et al.   HEREDITY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly

(2017) Anupriya Kaur Thind et al.   NATURE BIOTECHNOLOGY

Unlocking new alleles for leaf rust resistance in the Vavilov wheat collection

(2017) Adnan Riaz et al.   THEORETICAL AND APPLIED GENETICS

An innovative procedure of genome-wide association analysis fits studies on germplasm population and plant breeding

(2017) Jianbo He et al.   THEORETICAL AND APPLIED GENETICS

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

(2017) Zhen Liang et al.   Nature Communications

Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

(2017) Cox Lwaka Tamba et al.   PLoS Computational Biology

Genome-wide association study for grain yield and related traits in elite wheat varieties and advanced lines using SNP markers

(2017) Sheng-Xing Wang et al.   PLoS One

A review of wheat leaf rust research and the development of resistant cultivars in Canada

(2016) Brent D. McCallum et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Genome Wide Association Study of Seedling and Adult Plant Leaf Rust Resistance in Elite Spring Wheat Breeding Lines

(2016) Liangliang Gao et al.   PLoS One

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

(2016) Yi Zhang et al.   Nature Communications

Genome-Wide Association Mapping of Leaf Rust Response in a Durum Wheat Worldwide Germplasm Collection

(2016) Meriem Aoun et al.   Plant Genome

The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease

(2016) G. Shi et al.   Science Advances

Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

(2016) Shi-Bo Wang et al.   Scientific Reports

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

(2015) John W Moore et al.   NATURE GENETICS

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

(2015) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population

(2015) Beatriz CD Cuyabano et al.   BMC GENOMICS

Dynamic evolution of NBS–LRR genes in bread wheat and its progenitors

(2014) Longjiang Gu et al.   MOLECULAR GENETICS AND GENOMICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterisation and mapping of gene Lr73 conferring seedling resistance to Puccinia triticina in common wheat

(2014) R. F. Park et al.   THEORETICAL AND APPLIED GENETICS

Strategies for transferring resistance into wheat: from wide crosses to GM cassettes

(2014) Brande B. H. Wulff et al.   Frontiers in Plant Science

The past, present and future of breeding rust resistant wheat

(2014) Jeffrey G. Ellis et al.   Frontiers in Plant Science

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis

(2012) S. Kumar et al.   BIOINFORMATICS

Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)

(2012) B.R. Baum et al.   GENOME

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Serine/threonine kinase gene Stpk-V, a key member of powdery mildew resistance gene Pm21, confers powdery mildew resistance in wheat

(2011) A. Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Best linear unbiased prediction and optimum allocation of test resources in maize breeding with doubled haploids

(2011) Xuefei Mi et al.   THEORETICAL AND APPLIED GENETICS

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

An introgression on wheat chromosome 4DL in RL6077 (Thatcher*6/PI 250413) confers adult plant resistance to stripe rust and leaf rust (Lr67)

(2010) Colin W. Hiebert et al.   THEORETICAL AND APPLIED GENETICS

Characterization of a PDR type ABC transporter gene from wheat (Triticum aestivum L.)

(2009) Yi Shang et al.   CHINESE SCIENCE BULLETIN

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A new ZTL-type F-box functions as a positive regulator in disease resistance: VIGS analysis in barley against powdery mildew

(2009) Yasin Fatih Dagdas et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Use of synthetic hexaploid wheat to increase diversity for CIMMYT bread wheat improvement

(2008) S. Dreisigacker et al.