Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

(2013) Guanqing Jia et al.   NATURE GENETICS

Aegilops tauschiisingle nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

(2013) Jirui Wang et al.   NEW PHYTOLOGIST

Sequence-based SNP genotyping in durum wheat

(2013) Remco M.P. van Poecke et al.   PLANT BIOTECHNOLOGY JOURNAL

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

(2013) Caroline Pont et al.   PLANT JOURNAL

Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean

(2013) Qijian Song et al.   PLoS One

SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species

(2013) Rebekah E. Oliver et al.   PLoS One

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

(2013) M.-C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

Strategy for exploiting exotic germplasm using genetic, morphological, and environmental diversity: the Aegilops tauschii Coss. example

(2013) H. Jones et al.   THEORETICAL AND APPLIED GENETICS

Sequence-Based Mapping of the Polyploid Wheat Genome

(2013) Cyrille Saintenac et al.   G3-Genes Genomes Genetics

Next-generation sequencing applications for wheat crop improvement

(2012) Paul J. Berkman et al.   AMERICAN JOURNAL OF BOTANY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Bread matters: a national initiative to profile the genetic diversity of Australian wheat

(2012) David Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism discovery from wheat next-generation sequence data

(2012) Kaitao Lai et al.   PLANT BIOTECHNOLOGY JOURNAL

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

(2012) Sung-Chur Sim et al.   PLoS One

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

(2011) Shiaoman Chao et al.   BMC GENOMICS

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

Applicability of Aegilops tauschii drought tolerance traits to breeding of hexaploid wheat

(2011) Quahir Sohail et al.   BREEDING SCIENCE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

(2011) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

(2011) J. P. Cook et al.   PLANT PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

(2011) Cyrille Saintenac et al.   GENOME BIOLOGY

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming

(2010) Yonghui Wu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Association mapping in durum wheat grown across a broad range of water regimes

(2010) Marco Maccaferri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

(2009) Nathan M. Springer et al.   PLoS Genetics

SNP discovery in swine by reduced representation and high throughput pyrosequencing

(2008) Ralph T Wiedmann et al.   BMC GENETICS

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics